Experiment: RCH2_defined_noCarbon with Mixed culture; Burkholderia bryophila 376MFSha3.1 3:1 starting OD to Klebsiella and Glu_DLac_Acetate_mix 0.1 x
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt BWI76_RS19315 and BWI76_RS19320 overlap by 4 nucleotides BWI76_RS19320 and BWI76_RS19325 are separated by 64 nucleotides
BWI76_RS19315: BWI76_RS19315 - ABC transporter permease, at 4,023,203 to 4,024,240
_RS19315
BWI76_RS19320: BWI76_RS19320 - putative ABC transport system periplasmic binding protein, at 4,024,237 to 4,025,859
_RS19320
BWI76_RS19325: BWI76_RS19325 - mandelate racemase, at 4,025,924 to 4,027,078
_RS19325
Position (kb)
4024
4025
4026 Strain fitness (log2 ratio)
-2
-1
0
1 at 4023.369 kb on + strand, within BWI76_RS19315 at 4023.410 kb on - strand, within BWI76_RS19315 at 4023.486 kb on + strand, within BWI76_RS19315 at 4023.579 kb on - strand, within BWI76_RS19315 at 4023.784 kb on + strand, within BWI76_RS19315 at 4023.872 kb on + strand, within BWI76_RS19315 at 4024.108 kb on - strand, within BWI76_RS19315 at 4024.165 kb on + strand at 4024.165 kb on + strand at 4024.165 kb on + strand at 4024.225 kb on + strand at 4024.400 kb on - strand, within BWI76_RS19320 at 4024.404 kb on + strand, within BWI76_RS19320 at 4024.504 kb on - strand, within BWI76_RS19320 at 4025.386 kb on - strand, within BWI76_RS19320 at 4025.646 kb on + strand, within BWI76_RS19320 at 4026.801 kb on - strand, within BWI76_RS19325
Per-strain Table
Position Strand Gene LocusTag Fraction RCH2_defined_noCarbon with Mixed culture; Burkholderia bryophila 376MFSha3.1 3:1 starting OD to Klebsiella and Glu_DLac_Acetate_mix 0.1 x remove 4,023,369 + BWI76_RS19315 0.16 +0.7 4,023,410 - BWI76_RS19315 0.20 +0.4 4,023,486 + BWI76_RS19315 0.27 +0.4 4,023,579 - BWI76_RS19315 0.36 +0.3 4,023,784 + BWI76_RS19315 0.56 -0.3 4,023,872 + BWI76_RS19315 0.64 +0.1 4,024,108 - BWI76_RS19315 0.87 -0.3 4,024,165 + +0.5 4,024,165 + -0.1 4,024,165 + +0.1 4,024,225 + +0.2 4,024,400 - BWI76_RS19320 0.10 +1.6 4,024,404 + BWI76_RS19320 0.10 +0.7 4,024,504 - BWI76_RS19320 0.16 +0.0 4,025,386 - BWI76_RS19320 0.71 +0.6 4,025,646 + BWI76_RS19320 0.87 +0.4 4,026,801 - BWI76_RS19325 0.76 -2.6
Or see this region's nucleotide sequence