Strain Fitness in Klebsiella michiganensis M5al around BWI76_RS16210

Experiment: RCH2_defined_noCarbon with Mixed culture; Burkholderia bryophila 376MFSha3.1 3:1 starting OD to Klebsiella and Glu_DLac_Acetate_mix 0.1 x

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntBWI76_RS16205 and BWI76_RS16210 are separated by 343 nucleotidesBWI76_RS16210 and BWI76_RS16215 overlap by 4 nucleotidesBWI76_RS16215 and BWI76_RS16220 overlap by 23 nucleotides BWI76_RS16205: BWI76_RS16205 - NAD(P) transhydrogenase subunit alpha, at 3,362,286 to 3,363,815 _RS16205 BWI76_RS16210: BWI76_RS16210 - hypothetical protein, at 3,364,159 to 3,364,341 _RS16210 BWI76_RS16215: BWI76_RS16215 - hypothetical protein, at 3,364,338 to 3,365,288 _RS16215 BWI76_RS16220: BWI76_RS16220 - hypothetical protein, at 3,365,266 to 3,365,468 _RS16220 Position (kb) 3364 3365Strain fitness (log2 ratio) -1 0 1at 3363.199 kb on + strand, within BWI76_RS16205at 3363.293 kb on + strand, within BWI76_RS16205at 3363.315 kb on - strand, within BWI76_RS16205at 3363.786 kb on - strandat 3363.893 kb on + strandat 3364.072 kb on + strandat 3364.250 kb on + strand, within BWI76_RS16210at 3364.318 kb on - strand, within BWI76_RS16210at 3364.356 kb on + strandat 3364.364 kb on - strandat 3364.458 kb on + strand, within BWI76_RS16215at 3364.581 kb on - strand, within BWI76_RS16215at 3364.813 kb on + strand, within BWI76_RS16215at 3364.835 kb on + strand, within BWI76_RS16215at 3365.240 kb on + strandat 3365.251 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction RCH2_defined_noCarbon with Mixed culture; Burkholderia bryophila 376MFSha3.1 3:1 starting OD to Klebsiella and Glu_DLac_Acetate_mix 0.1 x
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3,363,199 + BWI76_RS16205 0.60 -0.2
3,363,293 + BWI76_RS16205 0.66 -0.4
3,363,315 - BWI76_RS16205 0.67 -0.5
3,363,786 - -0.8
3,363,893 + -1.2
3,364,072 + +0.6
3,364,250 + BWI76_RS16210 0.50 -1.3
3,364,318 - BWI76_RS16210 0.87 -1.6
3,364,356 + +0.9
3,364,364 - -1.5
3,364,458 + BWI76_RS16215 0.13 -1.3
3,364,581 - BWI76_RS16215 0.26 +0.2
3,364,813 + BWI76_RS16215 0.50 +0.5
3,364,835 + BWI76_RS16215 0.52 -0.1
3,365,240 + +0.5
3,365,251 - -0.4

Or see this region's nucleotide sequence