Experiment: RCH2_defined_noCarbon with Mixed culture; Burkholderia bryophila 376MFSha3.1 3:1 starting OD to Klebsiella and Glu_DLac_Acetate_mix 0.1 x
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt BWI76_RS11835 and BWI76_RS11840 are separated by 32 nucleotides BWI76_RS11840 and BWI76_RS11845 overlap by 1 nucleotides BWI76_RS11845 and BWI76_RS11850 are separated by 9 nucleotides
BWI76_RS11835: BWI76_RS11835 - putative regulatory protein MarR, at 2,488,472 to 2,488,927
_RS11835
BWI76_RS11840: BWI76_RS11840 - tryptophan synthase subunit alpha, at 2,488,960 to 2,489,769
_RS11840
BWI76_RS11845: BWI76_RS11845 - tryptophan synthase subunit beta, at 2,489,769 to 2,490,962
_RS11845
BWI76_RS11850: BWI76_RS11850 - bifunctional indole-3-glycerol phosphate synthase/phosphoribosylanthranilate isomerase, at 2,490,972 to 2,492,330
_RS11850
Position (kb)
2489
2490
2491 Strain fitness (log2 ratio)
-4
-3
-2
-1
0
1 at 2488.873 kb on - strand, within BWI76_RS11835 at 2489.110 kb on + strand, within BWI76_RS11840 at 2489.118 kb on - strand, within BWI76_RS11840 at 2489.335 kb on - strand, within BWI76_RS11840 at 2489.732 kb on + strand at 2489.811 kb on + strand at 2490.020 kb on - strand, within BWI76_RS11845 at 2490.126 kb on + strand, within BWI76_RS11845 at 2490.913 kb on + strand at 2490.932 kb on + strand at 2490.937 kb on + strand at 2490.955 kb on + strand at 2491.046 kb on - strand at 2491.136 kb on + strand, within BWI76_RS11850 at 2491.136 kb on + strand, within BWI76_RS11850 at 2491.324 kb on - strand, within BWI76_RS11850 at 2491.426 kb on - strand, within BWI76_RS11850 at 2491.542 kb on + strand, within BWI76_RS11850 at 2491.601 kb on - strand, within BWI76_RS11850 at 2491.672 kb on - strand, within BWI76_RS11850 at 2491.712 kb on - strand, within BWI76_RS11850 at 2491.732 kb on - strand, within BWI76_RS11850 at 2491.855 kb on + strand, within BWI76_RS11850
Per-strain Table
Position Strand Gene LocusTag Fraction RCH2_defined_noCarbon with Mixed culture; Burkholderia bryophila 376MFSha3.1 3:1 starting OD to Klebsiella and Glu_DLac_Acetate_mix 0.1 x remove 2,488,873 - BWI76_RS11835 0.88 -3.1 2,489,110 + BWI76_RS11840 0.19 -0.3 2,489,118 - BWI76_RS11840 0.20 -1.2 2,489,335 - BWI76_RS11840 0.46 -1.5 2,489,732 + -2.7 2,489,811 + -0.5 2,490,020 - BWI76_RS11845 0.21 -0.2 2,490,126 + BWI76_RS11845 0.30 -2.4 2,490,913 + -4.5 2,490,932 + -3.2 2,490,937 + -1.9 2,490,955 + -1.6 2,491,046 - -1.3 2,491,136 + BWI76_RS11850 0.12 -1.5 2,491,136 + BWI76_RS11850 0.12 -3.5 2,491,324 - BWI76_RS11850 0.26 -2.2 2,491,426 - BWI76_RS11850 0.33 -1.0 2,491,542 + BWI76_RS11850 0.42 -1.3 2,491,601 - BWI76_RS11850 0.46 -2.3 2,491,672 - BWI76_RS11850 0.52 -1.3 2,491,712 - BWI76_RS11850 0.54 +0.5 2,491,732 - BWI76_RS11850 0.56 -1.9 2,491,855 + BWI76_RS11850 0.65 -2.8
Or see this region's nucleotide sequence