Experiment: RCH2_defined_noCarbon with Mixed culture; Ralstonia sp. UNC404CL21Col 3:1 starting OD to Klebsiella and Glu_DLac_Acetate_mix 0.1 x
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt BWI76_RS21935 and BWI76_RS21940 are separated by 64 nucleotides BWI76_RS21940 and BWI76_RS21945 are separated by 144 nucleotides
BWI76_RS21935: BWI76_RS21935 - MFS transporter, at 4,582,309 to 4,583,502
_RS21935
BWI76_RS21940: BWI76_RS21940 - SDR family oxidoreductase, at 4,583,567 to 4,584,343
_RS21940
BWI76_RS21945: BWI76_RS21945 - LysR family transcriptional regulator, at 4,584,488 to 4,585,408
_RS21945
Position (kb)
4583
4584
4585 Strain fitness (log2 ratio)
-3
-2
-1
0
1
2
3 at 4582.771 kb on - strand, within BWI76_RS21935 at 4582.831 kb on + strand, within BWI76_RS21935 at 4582.831 kb on + strand, within BWI76_RS21935 at 4582.986 kb on - strand, within BWI76_RS21935 at 4583.084 kb on + strand, within BWI76_RS21935 at 4583.227 kb on + strand, within BWI76_RS21935 at 4583.323 kb on - strand, within BWI76_RS21935 at 4583.323 kb on - strand, within BWI76_RS21935 at 4583.652 kb on + strand at 4583.857 kb on - strand, within BWI76_RS21940 at 4583.974 kb on - strand, within BWI76_RS21940 at 4584.116 kb on - strand, within BWI76_RS21940 at 4584.350 kb on + strand at 4584.376 kb on + strand at 4584.386 kb on + strand at 4584.389 kb on - strand at 4584.394 kb on - strand at 4584.394 kb on - strand at 4584.614 kb on + strand, within BWI76_RS21945 at 4584.730 kb on + strand at 4584.738 kb on - strand, within BWI76_RS21945 at 4585.201 kb on - strand, within BWI76_RS21945 at 4585.327 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction RCH2_defined_noCarbon with Mixed culture; Ralstonia sp. UNC404CL21Col 3:1 starting OD to Klebsiella and Glu_DLac_Acetate_mix 0.1 x remove 4,582,771 - BWI76_RS21935 0.39 +0.2 4,582,831 + BWI76_RS21935 0.44 +1.5 4,582,831 + BWI76_RS21935 0.44 -1.9 4,582,986 - BWI76_RS21935 0.57 +0.1 4,583,084 + BWI76_RS21935 0.65 +0.1 4,583,227 + BWI76_RS21935 0.77 +0.7 4,583,323 - BWI76_RS21935 0.85 +0.3 4,583,323 - BWI76_RS21935 0.85 +1.1 4,583,652 + +0.2 4,583,857 - BWI76_RS21940 0.37 +0.3 4,583,974 - BWI76_RS21940 0.52 -1.9 4,584,116 - BWI76_RS21940 0.71 -3.6 4,584,350 + -0.7 4,584,376 + -0.6 4,584,386 + -0.3 4,584,389 - +1.3 4,584,394 - +0.4 4,584,394 - +0.6 4,584,614 + BWI76_RS21945 0.14 +0.4 4,584,730 + +3.7 4,584,738 - BWI76_RS21945 0.27 +1.2 4,585,201 - BWI76_RS21945 0.77 +0.3 4,585,327 + -0.1
Or see this region's nucleotide sequence