Experiment: RCH2_defined_noCarbon with Mixed culture; Ralstonia sp. UNC404CL21Col 3:1 starting OD to Klebsiella and Glu_DLac_Acetate_mix 0.1 x
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt BWI76_RS08900 and BWI76_RS08905 are separated by 13 nucleotides BWI76_RS08905 and BWI76_RS08910 overlap by 1 nucleotides BWI76_RS08910 and BWI76_RS08915 are separated by 218 nucleotides
BWI76_RS08900: BWI76_RS08900 - putative short-chain dehydrogenase/reductase SDR, at 1,874,102 to 1,874,851
_RS08900
BWI76_RS08905: BWI76_RS08905 - transketolase, at 1,874,865 to 1,875,710
_RS08905
BWI76_RS08910: BWI76_RS08910 - transketolase domain-containing protein, at 1,875,710 to 1,876,702
_RS08910
BWI76_RS08915: BWI76_RS08915 - ATP-dependent RNA helicase RhlE, at 1,876,921 to 1,878,273
_RS08915
Position (kb)
1875
1876
1877 Strain fitness (log2 ratio)
-1
0
1
2 at 1874.779 kb on - strand at 1874.810 kb on + strand at 1874.951 kb on + strand, within BWI76_RS08905 at 1874.959 kb on - strand, within BWI76_RS08905 at 1874.967 kb on + strand, within BWI76_RS08905 at 1874.975 kb on - strand, within BWI76_RS08905 at 1875.195 kb on - strand, within BWI76_RS08905 at 1875.368 kb on - strand, within BWI76_RS08905 at 1875.447 kb on - strand, within BWI76_RS08905 at 1875.468 kb on + strand, within BWI76_RS08905 at 1875.590 kb on + strand, within BWI76_RS08905 at 1875.592 kb on + strand, within BWI76_RS08905 at 1876.162 kb on + strand, within BWI76_RS08910 at 1876.245 kb on - strand, within BWI76_RS08910 at 1876.257 kb on + strand, within BWI76_RS08910 at 1876.316 kb on - strand, within BWI76_RS08910 at 1876.316 kb on - strand, within BWI76_RS08910 at 1876.327 kb on + strand, within BWI76_RS08910 at 1876.374 kb on + strand, within BWI76_RS08910 at 1876.382 kb on - strand, within BWI76_RS08910 at 1876.424 kb on - strand, within BWI76_RS08910 at 1876.569 kb on - strand, within BWI76_RS08910 at 1876.645 kb on - strand at 1876.977 kb on + strand at 1876.982 kb on + strand at 1876.985 kb on - strand at 1877.066 kb on - strand, within BWI76_RS08915 at 1877.105 kb on + strand, within BWI76_RS08915 at 1877.165 kb on - strand, within BWI76_RS08915 at 1877.341 kb on - strand at 1877.349 kb on - strand, within BWI76_RS08915 at 1877.440 kb on - strand, within BWI76_RS08915 at 1877.478 kb on + strand, within BWI76_RS08915 at 1877.556 kb on + strand, within BWI76_RS08915 at 1877.564 kb on - strand, within BWI76_RS08915
Per-strain Table
Position Strand Gene LocusTag Fraction RCH2_defined_noCarbon with Mixed culture; Ralstonia sp. UNC404CL21Col 3:1 starting OD to Klebsiella and Glu_DLac_Acetate_mix 0.1 x remove 1,874,779 - +0.2 1,874,810 + +1.8 1,874,951 + BWI76_RS08905 0.10 +0.6 1,874,959 - BWI76_RS08905 0.11 +0.3 1,874,967 + BWI76_RS08905 0.12 +1.4 1,874,975 - BWI76_RS08905 0.13 +0.2 1,875,195 - BWI76_RS08905 0.39 +0.4 1,875,368 - BWI76_RS08905 0.59 +0.7 1,875,447 - BWI76_RS08905 0.69 -1.4 1,875,468 + BWI76_RS08905 0.71 +0.3 1,875,590 + BWI76_RS08905 0.86 +1.0 1,875,592 + BWI76_RS08905 0.86 -0.0 1,876,162 + BWI76_RS08910 0.46 +0.0 1,876,245 - BWI76_RS08910 0.54 +1.4 1,876,257 + BWI76_RS08910 0.55 +1.3 1,876,316 - BWI76_RS08910 0.61 +0.8 1,876,316 - BWI76_RS08910 0.61 -0.4 1,876,327 + BWI76_RS08910 0.62 +0.8 1,876,374 + BWI76_RS08910 0.67 -1.2 1,876,382 - BWI76_RS08910 0.68 +2.4 1,876,424 - BWI76_RS08910 0.72 +0.8 1,876,569 - BWI76_RS08910 0.87 +0.2 1,876,645 - +0.7 1,876,977 + +0.4 1,876,982 + +1.5 1,876,985 - -0.3 1,877,066 - BWI76_RS08915 0.11 +1.5 1,877,105 + BWI76_RS08915 0.14 +1.0 1,877,165 - BWI76_RS08915 0.18 +0.6 1,877,341 - -1.5 1,877,349 - BWI76_RS08915 0.32 +1.3 1,877,440 - BWI76_RS08915 0.38 +0.9 1,877,478 + BWI76_RS08915 0.41 +1.1 1,877,556 + BWI76_RS08915 0.47 -0.4 1,877,564 - BWI76_RS08915 0.48 +0.4
Or see this region's nucleotide sequence