Experiment: RCH2_defined_noCarbon with Mixed culture; Ralstonia sp. UNC404CL21Col 3:1 starting OD to Klebsiella and Glu_DLac_Acetate_mix 0.1 x
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt BWI76_RS05865 and BWI76_RS05870 overlap by 4 nucleotides BWI76_RS05870 and BWI76_RS05875 are separated by 23 nucleotides BWI76_RS05875 and BWI76_RS05880 are separated by 7 nucleotides BWI76_RS05880 and BWI76_RS05885 are separated by 100 nucleotides
BWI76_RS05865: BWI76_RS05865 - ABC transporter permease, at 1,232,062 to 1,233,630
_RS05865
BWI76_RS05870: BWI76_RS05870 - ABC transporter, at 1,233,627 to 1,234,370
_RS05870
BWI76_RS05875: BWI76_RS05875 - hypothetical protein, at 1,234,394 to 1,236,181
_RS05875
BWI76_RS05880: BWI76_RS05880 - AraC-type DNA-binding domain-containing protein, at 1,236,189 to 1,236,986
_RS05880
BWI76_RS05885: BWI76_RS05885 - anion permease, at 1,237,087 to 1,237,896
_RS05885
Position (kb) 1234
1235
1236
1237 Strain fitness (log2 ratio) -1
0
1
2 at 1233.417 kb on + strand, within BWI76_RS05865 at 1233.562 kb on + strand at 1233.574 kb on + strand at 1233.575 kb on - strand at 1233.624 kb on + strand at 1233.624 kb on + strand at 1233.642 kb on - strand at 1233.680 kb on + strand at 1233.707 kb on + strand, within BWI76_RS05870 at 1233.760 kb on + strand, within BWI76_RS05870 at 1234.282 kb on + strand, within BWI76_RS05870 at 1234.295 kb on - strand, within BWI76_RS05870 at 1234.458 kb on + strand at 1234.493 kb on + strand at 1234.530 kb on + strand at 1234.586 kb on - strand, within BWI76_RS05875 at 1234.795 kb on + strand, within BWI76_RS05875 at 1234.976 kb on + strand, within BWI76_RS05875 at 1234.981 kb on - strand, within BWI76_RS05875 at 1235.194 kb on - strand, within BWI76_RS05875 at 1235.320 kb on + strand, within BWI76_RS05875 at 1235.598 kb on + strand, within BWI76_RS05875 at 1235.814 kb on - strand, within BWI76_RS05875 at 1236.204 kb on - strand at 1236.252 kb on + strand at 1236.300 kb on + strand, within BWI76_RS05880 at 1236.430 kb on - strand, within BWI76_RS05880 at 1236.989 kb on + strand at 1236.989 kb on + strand at 1236.989 kb on + strand at 1237.174 kb on - strand, within BWI76_RS05885
Per-strain Table
Position Strand Gene LocusTag Fraction RCH2_defined_noCarbon with Mixed culture; Ralstonia sp. UNC404CL21Col 3:1 starting OD to Klebsiella and Glu_DLac_Acetate_mix 0.1 x remove 1,233,417 + BWI76_RS05865 0.86 +0.6 1,233,562 + +1.5 1,233,574 + +1.3 1,233,575 - -0.1 1,233,624 + +0.6 1,233,624 + +0.5 1,233,642 - +2.4 1,233,680 + +0.9 1,233,707 + BWI76_RS05870 0.11 -0.1 1,233,760 + BWI76_RS05870 0.18 +0.3 1,234,282 + BWI76_RS05870 0.88 +1.5 1,234,295 - BWI76_RS05870 0.90 +0.3 1,234,458 + -0.1 1,234,493 + +0.2 1,234,530 + +0.4 1,234,586 - BWI76_RS05875 0.11 +1.4 1,234,795 + BWI76_RS05875 0.22 +0.0 1,234,976 + BWI76_RS05875 0.33 +0.9 1,234,981 - BWI76_RS05875 0.33 +0.7 1,235,194 - BWI76_RS05875 0.45 +0.6 1,235,320 + BWI76_RS05875 0.52 +1.2 1,235,598 + BWI76_RS05875 0.67 +0.7 1,235,814 - BWI76_RS05875 0.79 +0.5 1,236,204 - +0.4 1,236,252 + +1.0 1,236,300 + BWI76_RS05880 0.14 -0.5 1,236,430 - BWI76_RS05880 0.30 +1.4 1,236,989 + +2.6 1,236,989 + +0.3 1,236,989 + +1.0 1,237,174 - BWI76_RS05885 0.11 -0.2
Or see this region's nucleotide sequence