Experiment: RCH2_defined_noCarbon with Mixed culture; Microbacterium sp. AnTP90 3:1 starting OD to Klebsiella and Glu_DLac_Acetate_mix 1 x
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt BWI76_RS24530 and BWI76_RS24535 are separated by 46 nucleotides BWI76_RS24535 and BWI76_RS24540 are separated by 8 nucleotides BWI76_RS24540 and BWI76_RS24545 are separated by 13 nucleotides BWI76_RS24545 and BWI76_RS24550 are separated by 233 nucleotides
BWI76_RS24530: BWI76_RS24530 - cytosine/purines uracil thiamine allantoin permease, at 5,113,275 to 5,114,882
_RS24530
BWI76_RS24535: BWI76_RS24535 - tRNA (adenosine(37)-N6)-threonylcarbamoyltransferase complex transferase subunit TsaD, at 5,114,929 to 5,115,942
_RS24535
BWI76_RS24540: BWI76_RS24540 - hypothetical protein, at 5,115,951 to 5,116,166
_RS24540
BWI76_RS24545: BWI76_RS24545 - 30S ribosomal protein S21, at 5,116,180 to 5,116,395
_RS24545
BWI76_RS24550: BWI76_RS24550 - DNA primase, at 5,116,629 to 5,118,374
_RS24550
Position (kb)
5114
5115
5116 Strain fitness (log2 ratio)
-3
-2
-1
0
1 at 5113.941 kb on - strand, within BWI76_RS24530 at 5113.945 kb on + strand, within BWI76_RS24530 at 5113.953 kb on - strand, within BWI76_RS24530 at 5114.064 kb on + strand, within BWI76_RS24530 at 5114.064 kb on + strand, within BWI76_RS24530 at 5114.148 kb on + strand, within BWI76_RS24530 at 5114.150 kb on + strand, within BWI76_RS24530 at 5114.150 kb on + strand, within BWI76_RS24530 at 5114.156 kb on - strand at 5114.174 kb on - strand, within BWI76_RS24530 at 5114.229 kb on - strand, within BWI76_RS24530 at 5114.372 kb on - strand, within BWI76_RS24530 at 5114.381 kb on + strand, within BWI76_RS24530 at 5114.389 kb on - strand, within BWI76_RS24530 at 5114.428 kb on + strand, within BWI76_RS24530 at 5114.565 kb on + strand, within BWI76_RS24530 at 5114.710 kb on + strand, within BWI76_RS24530 at 5114.718 kb on - strand, within BWI76_RS24530 at 5114.757 kb on - strand at 5114.762 kb on - strand at 5114.864 kb on + strand at 5114.864 kb on + strand at 5115.956 kb on - strand at 5115.982 kb on - strand, within BWI76_RS24540 at 5115.982 kb on - strand, within BWI76_RS24540 at 5115.982 kb on - strand, within BWI76_RS24540 at 5115.982 kb on - strand, within BWI76_RS24540 at 5115.982 kb on - strand, within BWI76_RS24540 at 5115.982 kb on - strand, within BWI76_RS24540 at 5115.982 kb on - strand, within BWI76_RS24540 at 5116.003 kb on - strand, within BWI76_RS24540 at 5116.012 kb on + strand, within BWI76_RS24540 at 5116.017 kb on + strand, within BWI76_RS24540 at 5116.526 kb on + strand at 5116.531 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction RCH2_defined_noCarbon with Mixed culture; Microbacterium sp. AnTP90 3:1 starting OD to Klebsiella and Glu_DLac_Acetate_mix 1 x remove 5,113,941 - BWI76_RS24530 0.41 -0.8 5,113,945 + BWI76_RS24530 0.42 -0.3 5,113,953 - BWI76_RS24530 0.42 -0.0 5,114,064 + BWI76_RS24530 0.49 -0.0 5,114,064 + BWI76_RS24530 0.49 +1.2 5,114,148 + BWI76_RS24530 0.54 +0.0 5,114,150 + BWI76_RS24530 0.54 +0.2 5,114,150 + BWI76_RS24530 0.54 -0.4 5,114,156 - -2.2 5,114,174 - BWI76_RS24530 0.56 +1.7 5,114,229 - BWI76_RS24530 0.59 -1.4 5,114,372 - BWI76_RS24530 0.68 -2.3 5,114,381 + BWI76_RS24530 0.69 +0.9 5,114,389 - BWI76_RS24530 0.69 -3.1 5,114,428 + BWI76_RS24530 0.72 -0.7 5,114,565 + BWI76_RS24530 0.80 +0.5 5,114,710 + BWI76_RS24530 0.89 +0.5 5,114,718 - BWI76_RS24530 0.90 +1.2 5,114,757 - +0.1 5,114,762 - +1.2 5,114,864 + +0.6 5,114,864 + -0.1 5,115,956 - +0.5 5,115,982 - BWI76_RS24540 0.14 -0.4 5,115,982 - BWI76_RS24540 0.14 -0.0 5,115,982 - BWI76_RS24540 0.14 -0.7 5,115,982 - BWI76_RS24540 0.14 +1.1 5,115,982 - BWI76_RS24540 0.14 +0.1 5,115,982 - BWI76_RS24540 0.14 -0.5 5,115,982 - BWI76_RS24540 0.14 -0.6 5,116,003 - BWI76_RS24540 0.24 +1.1 5,116,012 + BWI76_RS24540 0.28 -0.0 5,116,017 + BWI76_RS24540 0.31 -0.4 5,116,526 + -0.2 5,116,531 + +0.9
Or see this region's nucleotide sequence