Experiment: RCH2_defined_noCarbon with Mixed culture; Microbacterium sp. AnTP90 3:1 starting OD to Klebsiella and Glu_DLac_Acetate_mix 1 x
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt BWI76_RS24510 and BWI76_RS24515 are separated by 9 nucleotides BWI76_RS24515 and BWI76_RS24520 are separated by 0 nucleotides BWI76_RS24520 and BWI76_RS24525 are separated by 8 nucleotides
BWI76_RS24510: BWI76_RS24510 - urease subunit alpha, at 5,109,639 to 5,111,342
_RS24510
BWI76_RS24515: BWI76_RS24515 - urease accessory protein UreE, at 5,111,352 to 5,111,822
_RS24515
BWI76_RS24520: BWI76_RS24520 - urease accessory protein UreF, at 5,111,823 to 5,112,497
_RS24520
BWI76_RS24525: BWI76_RS24525 - urease accessory protein UreG, at 5,112,506 to 5,113,123
_RS24525
Position (kb)
5111
5112 Strain fitness (log2 ratio)
-4
-3
-2
-1
0
1 at 5110.422 kb on - strand, within BWI76_RS24510 at 5110.539 kb on + strand, within BWI76_RS24510 at 5110.552 kb on - strand, within BWI76_RS24510 at 5110.572 kb on + strand, within BWI76_RS24510 at 5110.631 kb on - strand, within BWI76_RS24510 at 5110.837 kb on - strand, within BWI76_RS24510 at 5110.841 kb on + strand, within BWI76_RS24510 at 5110.883 kb on + strand, within BWI76_RS24510 at 5111.026 kb on + strand, within BWI76_RS24510 at 5111.049 kb on + strand, within BWI76_RS24510 at 5111.100 kb on + strand, within BWI76_RS24510 at 5111.154 kb on + strand, within BWI76_RS24510 at 5111.162 kb on - strand, within BWI76_RS24510 at 5111.265 kb on - strand at 5111.344 kb on - strand at 5111.401 kb on + strand, within BWI76_RS24515 at 5111.401 kb on + strand, within BWI76_RS24515 at 5111.409 kb on - strand, within BWI76_RS24515 at 5111.577 kb on + strand, within BWI76_RS24515 at 5111.604 kb on - strand, within BWI76_RS24515 at 5111.617 kb on + strand, within BWI76_RS24515 at 5111.617 kb on + strand, within BWI76_RS24515 at 5111.794 kb on + strand at 5111.940 kb on - strand, within BWI76_RS24520 at 5112.028 kb on - strand, within BWI76_RS24520 at 5112.135 kb on + strand, within BWI76_RS24520 at 5112.143 kb on - strand, within BWI76_RS24520 at 5112.392 kb on - strand, within BWI76_RS24520 at 5112.511 kb on - strand at 5112.582 kb on - strand, within BWI76_RS24525 at 5112.586 kb on + strand, within BWI76_RS24525 at 5112.594 kb on - strand, within BWI76_RS24525 at 5112.687 kb on - strand, within BWI76_RS24525
Per-strain Table
Position Strand Gene LocusTag Fraction RCH2_defined_noCarbon with Mixed culture; Microbacterium sp. AnTP90 3:1 starting OD to Klebsiella and Glu_DLac_Acetate_mix 1 x remove 5,110,422 - BWI76_RS24510 0.46 +0.2 5,110,539 + BWI76_RS24510 0.53 +0.7 5,110,552 - BWI76_RS24510 0.54 +0.3 5,110,572 + BWI76_RS24510 0.55 +0.8 5,110,631 - BWI76_RS24510 0.58 +0.4 5,110,837 - BWI76_RS24510 0.70 +0.0 5,110,841 + BWI76_RS24510 0.71 +0.5 5,110,883 + BWI76_RS24510 0.73 -2.2 5,111,026 + BWI76_RS24510 0.81 +0.4 5,111,049 + BWI76_RS24510 0.83 -3.8 5,111,100 + BWI76_RS24510 0.86 +1.1 5,111,154 + BWI76_RS24510 0.89 -1.4 5,111,162 - BWI76_RS24510 0.89 +1.1 5,111,265 - +0.1 5,111,344 - -1.8 5,111,401 + BWI76_RS24515 0.10 +0.6 5,111,401 + BWI76_RS24515 0.10 +0.5 5,111,409 - BWI76_RS24515 0.12 -0.4 5,111,577 + BWI76_RS24515 0.48 -0.3 5,111,604 - BWI76_RS24515 0.54 +1.7 5,111,617 + BWI76_RS24515 0.56 -0.0 5,111,617 + BWI76_RS24515 0.56 -1.3 5,111,794 + +0.5 5,111,940 - BWI76_RS24520 0.17 +0.0 5,112,028 - BWI76_RS24520 0.30 -0.1 5,112,135 + BWI76_RS24520 0.46 -0.4 5,112,143 - BWI76_RS24520 0.47 -0.6 5,112,392 - BWI76_RS24520 0.84 -0.7 5,112,511 - +0.9 5,112,582 - BWI76_RS24525 0.12 +0.2 5,112,586 + BWI76_RS24525 0.13 +0.4 5,112,594 - BWI76_RS24525 0.14 +1.3 5,112,687 - BWI76_RS24525 0.29 +0.9
Or see this region's nucleotide sequence