Experiment: RCH2_defined_noCarbon with Mixed culture; Microbacterium sp. AnTP90 3:1 starting OD to Klebsiella and Glu_DLac_Acetate_mix 1 x
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt BWI76_RS22305 and BWI76_RS22310 overlap by 4 nucleotides BWI76_RS22310 and BWI76_RS22315 overlap by 1 nucleotides BWI76_RS22315 and BWI76_RS22320 are separated by 9 nucleotides
BWI76_RS22305: BWI76_RS22305 - formate hydrogenlyase maturation protein HycH, at 4,650,425 to 4,650,835
_RS22305
BWI76_RS22310: BWI76_RS22310 - hydrogenase 3 small subunit, at 4,650,832 to 4,651,599
_RS22310
BWI76_RS22315: BWI76_RS22315 - formate hydrogenlyase complex iron-sulfur subunit, at 4,651,599 to 4,652,141
_RS22315
BWI76_RS22320: BWI76_RS22320 - hydrogenase 3 large subunit, at 4,652,151 to 4,653,860
_RS22320
Position (kb) 4651
4652
4653 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3
4 at 4650.990 kb on + strand, within BWI76_RS22310 at 4651.316 kb on + strand, within BWI76_RS22310 at 4651.334 kb on - strand, within BWI76_RS22310 at 4651.414 kb on - strand, within BWI76_RS22310 at 4651.414 kb on - strand, within BWI76_RS22310 at 4651.518 kb on + strand, within BWI76_RS22310 at 4651.620 kb on - strand at 4651.646 kb on + strand at 4651.656 kb on + strand, within BWI76_RS22315 at 4651.664 kb on - strand, within BWI76_RS22315 at 4651.664 kb on - strand, within BWI76_RS22315 at 4652.005 kb on - strand, within BWI76_RS22315 at 4652.078 kb on + strand, within BWI76_RS22315 at 4652.102 kb on - strand at 4652.190 kb on + strand at 4652.212 kb on + strand at 4652.234 kb on + strand at 4652.257 kb on + strand at 4652.257 kb on + strand at 4652.265 kb on - strand at 4652.281 kb on - strand at 4652.309 kb on + strand at 4652.392 kb on - strand, within BWI76_RS22320 at 4652.465 kb on + strand, within BWI76_RS22320 at 4652.472 kb on + strand, within BWI76_RS22320 at 4652.473 kb on - strand, within BWI76_RS22320 at 4652.542 kb on + strand, within BWI76_RS22320 at 4652.550 kb on - strand, within BWI76_RS22320 at 4652.550 kb on - strand, within BWI76_RS22320 at 4652.597 kb on - strand, within BWI76_RS22320 at 4652.794 kb on - strand, within BWI76_RS22320 at 4652.884 kb on - strand, within BWI76_RS22320 at 4652.932 kb on - strand, within BWI76_RS22320
Per-strain Table
Position Strand Gene LocusTag Fraction RCH2_defined_noCarbon with Mixed culture; Microbacterium sp. AnTP90 3:1 starting OD to Klebsiella and Glu_DLac_Acetate_mix 1 x remove 4,650,990 + BWI76_RS22310 0.21 +0.4 4,651,316 + BWI76_RS22310 0.63 -0.2 4,651,334 - BWI76_RS22310 0.65 -3.3 4,651,414 - BWI76_RS22310 0.76 -3.4 4,651,414 - BWI76_RS22310 0.76 -2.0 4,651,518 + BWI76_RS22310 0.89 +0.1 4,651,620 - +0.5 4,651,646 + +0.8 4,651,656 + BWI76_RS22315 0.10 +1.5 4,651,664 - BWI76_RS22315 0.12 +1.0 4,651,664 - BWI76_RS22315 0.12 +2.3 4,652,005 - BWI76_RS22315 0.75 +0.0 4,652,078 + BWI76_RS22315 0.88 +0.8 4,652,102 - -0.9 4,652,190 + +3.9 4,652,212 + +0.3 4,652,234 + +0.8 4,652,257 + -0.3 4,652,257 + -0.9 4,652,265 - -1.7 4,652,281 - +0.5 4,652,309 + +1.0 4,652,392 - BWI76_RS22320 0.14 -0.1 4,652,465 + BWI76_RS22320 0.18 -0.9 4,652,472 + BWI76_RS22320 0.19 -1.0 4,652,473 - BWI76_RS22320 0.19 -0.8 4,652,542 + BWI76_RS22320 0.23 +1.1 4,652,550 - BWI76_RS22320 0.23 +0.3 4,652,550 - BWI76_RS22320 0.23 -3.0 4,652,597 - BWI76_RS22320 0.26 +0.5 4,652,794 - BWI76_RS22320 0.38 -0.3 4,652,884 - BWI76_RS22320 0.43 -3.5 4,652,932 - BWI76_RS22320 0.46 -3.3
Or see this region's nucleotide sequence