Experiment: RCH2_defined_noCarbon with Mixed culture; Microbacterium sp. AnTP90 3:1 starting OD to Klebsiella and Glu_DLac_Acetate_mix 1 x
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt BWI76_RS19230 and BWI76_RS19235 overlap by 4 nucleotides BWI76_RS19235 and BWI76_RS19240 are separated by 64 nucleotides BWI76_RS19240 and BWI76_RS19245 are separated by 27 nucleotides
BWI76_RS19230: BWI76_RS19230 - polar amino acid ABC transporter inner membrane subunit, at 4,001,672 to 4,002,397
_RS19230
BWI76_RS19235: BWI76_RS19235 - polar amino acid ABC transporter inner membrane subunit, at 4,002,394 to 4,003,086
_RS19235
BWI76_RS19240: BWI76_RS19240 - ABC transporter substrate-binding protein, at 4,003,151 to 4,003,924
_RS19240
BWI76_RS19245: BWI76_RS19245 - dimethylargininase, at 4,003,952 to 4,004,713
_RS19245
Position (kb)
4003
4004 Strain fitness (log2 ratio)
-3
-2
-1
0
1 at 4002.240 kb on + strand, within BWI76_RS19230 at 4002.248 kb on - strand, within BWI76_RS19230 at 4002.408 kb on - strand at 4002.436 kb on - strand at 4002.533 kb on + strand, within BWI76_RS19235 at 4002.556 kb on + strand, within BWI76_RS19235 at 4002.588 kb on + strand, within BWI76_RS19235 at 4002.643 kb on + strand, within BWI76_RS19235 at 4002.836 kb on - strand, within BWI76_RS19235 at 4003.014 kb on + strand, within BWI76_RS19235 at 4003.060 kb on + strand at 4003.221 kb on + strand at 4003.403 kb on - strand, within BWI76_RS19240 at 4003.893 kb on - strand at 4003.973 kb on + strand at 4004.152 kb on - strand, within BWI76_RS19245 at 4004.159 kb on - strand, within BWI76_RS19245 at 4004.271 kb on - strand, within BWI76_RS19245 at 4004.273 kb on + strand, within BWI76_RS19245 at 4004.588 kb on + strand, within BWI76_RS19245 at 4004.662 kb on - strand at 4004.741 kb on + strand at 4004.805 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction RCH2_defined_noCarbon with Mixed culture; Microbacterium sp. AnTP90 3:1 starting OD to Klebsiella and Glu_DLac_Acetate_mix 1 x remove 4,002,240 + BWI76_RS19230 0.78 -0.2 4,002,248 - BWI76_RS19230 0.79 +0.2 4,002,408 - +0.1 4,002,436 - +0.4 4,002,533 + BWI76_RS19235 0.20 -2.8 4,002,556 + BWI76_RS19235 0.23 -0.5 4,002,588 + BWI76_RS19235 0.28 -0.7 4,002,643 + BWI76_RS19235 0.36 +1.0 4,002,836 - BWI76_RS19235 0.64 -2.0 4,003,014 + BWI76_RS19235 0.89 -0.4 4,003,060 + +1.1 4,003,221 + -2.7 4,003,403 - BWI76_RS19240 0.33 -0.9 4,003,893 - +0.6 4,003,973 + +0.3 4,004,152 - BWI76_RS19245 0.26 +0.1 4,004,159 - BWI76_RS19245 0.27 -0.4 4,004,271 - BWI76_RS19245 0.42 -0.6 4,004,273 + BWI76_RS19245 0.42 -2.4 4,004,588 + BWI76_RS19245 0.83 -0.6 4,004,662 - -3.1 4,004,741 + -0.1 4,004,805 - -1.1
Or see this region's nucleotide sequence