Experiment: RCH2_defined_noCarbon with Mixed culture; Microbacterium sp. AnTP90 3:1 starting OD to Klebsiella and Glu_DLac_Acetate_mix 1 x
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt BWI76_RS17735 and BWI76_RS17740 are separated by 321 nucleotides BWI76_RS17740 and BWI76_RS17745 are separated by 59 nucleotides
BWI76_RS17735: BWI76_RS17735 - D-amino acid dehydrogenase small subunit, at 3,687,568 to 3,688,866
_RS17735
BWI76_RS17740: BWI76_RS17740 - SpoVR family protein, at 3,689,188 to 3,690,720
_RS17740
BWI76_RS17745: BWI76_RS17745 - fatty acid metabolism transcriptional regulator FadR, at 3,690,780 to 3,691,499
_RS17745
Position (kb)
3689
3690
3691 Strain fitness (log2 ratio)
-3
-2
-1
0
1
2 at 3688.330 kb on - strand, within BWI76_RS17735 at 3688.522 kb on + strand, within BWI76_RS17735 at 3688.677 kb on + strand, within BWI76_RS17735 at 3688.750 kb on + strand at 3688.800 kb on - strand at 3688.951 kb on - strand at 3688.978 kb on + strand at 3688.991 kb on - strand at 3689.053 kb on - strand at 3689.127 kb on + strand at 3689.232 kb on + strand at 3689.260 kb on + strand at 3689.267 kb on - strand at 3689.274 kb on + strand at 3689.492 kb on - strand, within BWI76_RS17740 at 3689.556 kb on - strand, within BWI76_RS17740 at 3689.689 kb on - strand, within BWI76_RS17740 at 3689.753 kb on - strand, within BWI76_RS17740 at 3689.753 kb on - strand, within BWI76_RS17740 at 3689.823 kb on + strand, within BWI76_RS17740 at 3690.054 kb on + strand, within BWI76_RS17740 at 3690.094 kb on - strand, within BWI76_RS17740 at 3690.132 kb on + strand, within BWI76_RS17740 at 3690.290 kb on + strand, within BWI76_RS17740 at 3690.328 kb on + strand, within BWI76_RS17740 at 3690.383 kb on + strand, within BWI76_RS17740 at 3690.383 kb on + strand, within BWI76_RS17740 at 3690.537 kb on - strand, within BWI76_RS17740 at 3690.583 kb on - strand at 3690.588 kb on + strand at 3691.536 kb on + strand at 3691.544 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction RCH2_defined_noCarbon with Mixed culture; Microbacterium sp. AnTP90 3:1 starting OD to Klebsiella and Glu_DLac_Acetate_mix 1 x remove 3,688,330 - BWI76_RS17735 0.59 -1.0 3,688,522 + BWI76_RS17735 0.73 -0.3 3,688,677 + BWI76_RS17735 0.85 -1.3 3,688,750 + +0.3 3,688,800 - -0.1 3,688,951 - +1.1 3,688,978 + +0.6 3,688,991 - +0.1 3,689,053 - +0.4 3,689,127 + +0.8 3,689,232 + +1.6 3,689,260 + +1.9 3,689,267 - -0.2 3,689,274 + -0.1 3,689,492 - BWI76_RS17740 0.20 +0.6 3,689,556 - BWI76_RS17740 0.24 +0.7 3,689,689 - BWI76_RS17740 0.33 -0.1 3,689,753 - BWI76_RS17740 0.37 +1.0 3,689,753 - BWI76_RS17740 0.37 -0.3 3,689,823 + BWI76_RS17740 0.41 +0.9 3,690,054 + BWI76_RS17740 0.56 -3.0 3,690,094 - BWI76_RS17740 0.59 +0.6 3,690,132 + BWI76_RS17740 0.62 +1.5 3,690,290 + BWI76_RS17740 0.72 -0.6 3,690,328 + BWI76_RS17740 0.74 +1.0 3,690,383 + BWI76_RS17740 0.78 +1.3 3,690,383 + BWI76_RS17740 0.78 -0.0 3,690,537 - BWI76_RS17740 0.88 +1.7 3,690,583 - -0.6 3,690,588 + +0.3 3,691,536 + -1.3 3,691,544 - -1.7
Or see this region's nucleotide sequence