Experiment: RCH2_defined_noCarbon with Mixed culture; Microbacterium sp. AnTP90 3:1 starting OD to Klebsiella and Glu_DLac_Acetate_mix 1 x
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt BWI76_RS17220 and BWI76_RS17225 overlap by 4 nucleotides BWI76_RS17225 and BWI76_RS17230 are separated by 11 nucleotides BWI76_RS17230 and BWI76_RS17235 are separated by 14 nucleotides
BWI76_RS17220: BWI76_RS17220 - oligopeptide ABC transporter ATP-binding protein OppF, at 3,566,713 to 3,567,717
_RS17220
BWI76_RS17225: BWI76_RS17225 - oligopeptide ABC transporter ATP-binding protein OppD, at 3,567,714 to 3,568,727
_RS17225
BWI76_RS17230: BWI76_RS17230 - peptide ABC transporter permease, at 3,568,739 to 3,569,647
_RS17230
BWI76_RS17235: BWI76_RS17235 - peptide ABC transporter permease, at 3,569,662 to 3,570,582
_RS17235
Position (kb)
3567
3568
3569 Strain fitness (log2 ratio)
-3
-2
-1
0
1 at 3566.719 kb on - strand at 3566.923 kb on + strand, within BWI76_RS17220 at 3566.924 kb on - strand, within BWI76_RS17220 at 3566.943 kb on - strand, within BWI76_RS17220 at 3567.198 kb on - strand, within BWI76_RS17220 at 3567.491 kb on + strand, within BWI76_RS17220 at 3567.585 kb on + strand, within BWI76_RS17220 at 3567.778 kb on - strand at 3567.874 kb on + strand, within BWI76_RS17225 at 3567.916 kb on + strand, within BWI76_RS17225 at 3567.924 kb on - strand, within BWI76_RS17225 at 3568.018 kb on - strand, within BWI76_RS17225 at 3568.138 kb on + strand, within BWI76_RS17225 at 3568.322 kb on - strand, within BWI76_RS17225 at 3568.341 kb on - strand, within BWI76_RS17225 at 3568.428 kb on - strand, within BWI76_RS17225 at 3568.453 kb on - strand, within BWI76_RS17225 at 3568.745 kb on - strand at 3568.882 kb on + strand, within BWI76_RS17230 at 3569.244 kb on - strand, within BWI76_RS17230 at 3569.287 kb on - strand, within BWI76_RS17230 at 3569.301 kb on + strand, within BWI76_RS17230
Per-strain Table
Position Strand Gene LocusTag Fraction RCH2_defined_noCarbon with Mixed culture; Microbacterium sp. AnTP90 3:1 starting OD to Klebsiella and Glu_DLac_Acetate_mix 1 x remove 3,566,719 - -0.1 3,566,923 + BWI76_RS17220 0.21 +0.6 3,566,924 - BWI76_RS17220 0.21 +1.0 3,566,943 - BWI76_RS17220 0.23 -0.3 3,567,198 - BWI76_RS17220 0.48 +1.1 3,567,491 + BWI76_RS17220 0.77 +0.1 3,567,585 + BWI76_RS17220 0.87 +1.5 3,567,778 - -0.8 3,567,874 + BWI76_RS17225 0.16 +1.7 3,567,916 + BWI76_RS17225 0.20 +0.3 3,567,924 - BWI76_RS17225 0.21 +0.4 3,568,018 - BWI76_RS17225 0.30 +0.6 3,568,138 + BWI76_RS17225 0.42 +1.2 3,568,322 - BWI76_RS17225 0.60 +0.5 3,568,341 - BWI76_RS17225 0.62 +0.4 3,568,428 - BWI76_RS17225 0.70 +1.5 3,568,453 - BWI76_RS17225 0.73 -1.6 3,568,745 - -0.0 3,568,882 + BWI76_RS17230 0.16 +1.6 3,569,244 - BWI76_RS17230 0.56 -0.6 3,569,287 - BWI76_RS17230 0.60 +1.2 3,569,301 + BWI76_RS17230 0.62 -2.9
Or see this region's nucleotide sequence