Experiment: RCH2_defined_noCarbon with Mixed culture; Microbacterium sp. AnTP90 3:1 starting OD to Klebsiella and Glu_DLac_Acetate_mix 1 x
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt BWI76_RS15800 and BWI76_RS15805 are separated by 104 nucleotides BWI76_RS15805 and BWI76_RS15810 are separated by 182 nucleotides BWI76_RS15810 and BWI76_RS15815 overlap by 4 nucleotides BWI76_RS15815 and BWI76_RS15820 are separated by 322 nucleotides
BWI76_RS15800: BWI76_RS15800 - transcriptional regulator, at 3,287,137 to 3,287,370
_RS15800
BWI76_RS15805: BWI76_RS15805 - hypothetical protein, at 3,287,475 to 3,288,164
_RS15805
BWI76_RS15810: BWI76_RS15810 - hypothetical protein, at 3,288,347 to 3,288,781
_RS15810
BWI76_RS15815: BWI76_RS15815 - hypothetical protein, at 3,288,778 to 3,289,425
_RS15815
BWI76_RS15820: BWI76_RS15820 - hypothetical protein, at 3,289,748 to 3,289,951
_RS15820
Position (kb)
3288
3289 Strain fitness (log2 ratio)
-5
-4
-3
-2
-1
0
1 at 3288.160 kb on + strand at 3288.309 kb on + strand at 3288.311 kb on + strand at 3288.408 kb on - strand, within BWI76_RS15810 at 3288.618 kb on + strand, within BWI76_RS15810 at 3288.639 kb on + strand, within BWI76_RS15810 at 3288.675 kb on + strand, within BWI76_RS15810 at 3288.683 kb on - strand, within BWI76_RS15810 at 3288.686 kb on + strand, within BWI76_RS15810 at 3288.686 kb on + strand, within BWI76_RS15810 at 3288.688 kb on + strand, within BWI76_RS15810 at 3288.688 kb on + strand, within BWI76_RS15810 at 3288.688 kb on + strand, within BWI76_RS15810 at 3288.735 kb on - strand, within BWI76_RS15810 at 3288.832 kb on + strand at 3288.832 kb on + strand at 3288.832 kb on + strand at 3288.833 kb on + strand at 3288.850 kb on - strand, within BWI76_RS15815 at 3288.900 kb on + strand, within BWI76_RS15815 at 3288.901 kb on + strand at 3288.912 kb on + strand, within BWI76_RS15815 at 3288.959 kb on - strand, within BWI76_RS15815 at 3288.966 kb on + strand, within BWI76_RS15815 at 3289.030 kb on + strand, within BWI76_RS15815 at 3289.030 kb on + strand, within BWI76_RS15815 at 3289.030 kb on + strand, within BWI76_RS15815 at 3289.036 kb on + strand, within BWI76_RS15815 at 3289.036 kb on + strand at 3289.036 kb on + strand, within BWI76_RS15815 at 3289.036 kb on + strand, within BWI76_RS15815 at 3289.038 kb on - strand, within BWI76_RS15815 at 3289.038 kb on - strand, within BWI76_RS15815 at 3289.044 kb on - strand, within BWI76_RS15815 at 3289.044 kb on - strand, within BWI76_RS15815 at 3289.044 kb on - strand, within BWI76_RS15815 at 3289.197 kb on - strand, within BWI76_RS15815 at 3289.202 kb on - strand, within BWI76_RS15815 at 3289.202 kb on - strand, within BWI76_RS15815 at 3289.297 kb on + strand, within BWI76_RS15815 at 3289.305 kb on + strand, within BWI76_RS15815 at 3289.311 kb on + strand, within BWI76_RS15815 at 3289.336 kb on + strand, within BWI76_RS15815 at 3289.392 kb on - strand at 3289.664 kb on + strand at 3289.672 kb on - strand at 3289.753 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction RCH2_defined_noCarbon with Mixed culture; Microbacterium sp. AnTP90 3:1 starting OD to Klebsiella and Glu_DLac_Acetate_mix 1 x remove 3,288,160 + -1.2 3,288,309 + +0.1 3,288,311 + +1.1 3,288,408 - BWI76_RS15810 0.14 -2.1 3,288,618 + BWI76_RS15810 0.62 -0.9 3,288,639 + BWI76_RS15810 0.67 -2.2 3,288,675 + BWI76_RS15810 0.75 -1.1 3,288,683 - BWI76_RS15810 0.77 +1.1 3,288,686 + BWI76_RS15810 0.78 -2.9 3,288,686 + BWI76_RS15810 0.78 -0.3 3,288,688 + BWI76_RS15810 0.78 -1.6 3,288,688 + BWI76_RS15810 0.78 -1.8 3,288,688 + BWI76_RS15810 0.78 -3.6 3,288,735 - BWI76_RS15810 0.89 -0.9 3,288,832 + -0.4 3,288,832 + +0.1 3,288,832 + -0.9 3,288,833 + -1.8 3,288,850 - BWI76_RS15815 0.11 -1.2 3,288,900 + BWI76_RS15815 0.19 -0.8 3,288,901 + -0.4 3,288,912 + BWI76_RS15815 0.21 -2.7 3,288,959 - BWI76_RS15815 0.28 +1.1 3,288,966 + BWI76_RS15815 0.29 -0.6 3,289,030 + BWI76_RS15815 0.39 -3.6 3,289,030 + BWI76_RS15815 0.39 -0.8 3,289,030 + BWI76_RS15815 0.39 +1.0 3,289,036 + BWI76_RS15815 0.40 -0.9 3,289,036 + +1.1 3,289,036 + BWI76_RS15815 0.40 -0.4 3,289,036 + BWI76_RS15815 0.40 -4.8 3,289,038 - BWI76_RS15815 0.40 -2.9 3,289,038 - BWI76_RS15815 0.40 +0.1 3,289,044 - BWI76_RS15815 0.41 -4.7 3,289,044 - BWI76_RS15815 0.41 +0.3 3,289,044 - BWI76_RS15815 0.41 +1.0 3,289,197 - BWI76_RS15815 0.65 +0.0 3,289,202 - BWI76_RS15815 0.65 +0.0 3,289,202 - BWI76_RS15815 0.65 -2.9 3,289,297 + BWI76_RS15815 0.80 -0.1 3,289,305 + BWI76_RS15815 0.81 -0.1 3,289,311 + BWI76_RS15815 0.82 -1.5 3,289,336 + BWI76_RS15815 0.86 -1.5 3,289,392 - +0.6 3,289,664 + -1.9 3,289,672 - -1.4 3,289,753 - +0.2
Or see this region's nucleotide sequence