Experiment: RCH2_defined_noCarbon with Mixed culture; Microbacterium sp. AnTP90 3:1 starting OD to Klebsiella and Glu_DLac_Acetate_mix 1 x
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt BWI76_RS13780 and BWI76_RS13785 overlap by 4 nucleotides BWI76_RS13785 and BWI76_RS13790 overlap by 4 nucleotides BWI76_RS13790 and BWI76_RS13795 are separated by 10 nucleotides
BWI76_RS13780: BWI76_RS13780 - ABC transporter ATP-binding protein, at 2,873,084 to 2,874,688
_RS13780
BWI76_RS13785: BWI76_RS13785 - ABC transporter permease, at 2,874,685 to 2,875,536
_RS13785
BWI76_RS13790: BWI76_RS13790 - peptide ABC transporter permease, at 2,875,533 to 2,876,477
_RS13790
BWI76_RS13795: BWI76_RS13795 - ABC transporter substrate binding protein, at 2,876,488 to 2,878,110
_RS13795
Position (kb)
2874
2875
2876 Strain fitness (log2 ratio)
-4
-3
-2
-1
0
1 at 2873.948 kb on - strand, within BWI76_RS13780 at 2874.219 kb on - strand, within BWI76_RS13780 at 2874.222 kb on + strand, within BWI76_RS13780 at 2874.256 kb on + strand, within BWI76_RS13780 at 2874.256 kb on + strand, within BWI76_RS13780 at 2874.266 kb on + strand, within BWI76_RS13780 at 2874.278 kb on - strand, within BWI76_RS13780 at 2874.387 kb on - strand, within BWI76_RS13780 at 2874.987 kb on - strand, within BWI76_RS13785 at 2875.108 kb on + strand, within BWI76_RS13785 at 2875.640 kb on - strand, within BWI76_RS13790 at 2875.700 kb on - strand, within BWI76_RS13790 at 2875.855 kb on + strand, within BWI76_RS13790 at 2875.877 kb on + strand, within BWI76_RS13790 at 2875.877 kb on + strand, within BWI76_RS13790 at 2875.885 kb on - strand, within BWI76_RS13790 at 2875.885 kb on - strand, within BWI76_RS13790 at 2875.994 kb on + strand, within BWI76_RS13790 at 2876.486 kb on + strand at 2876.494 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction RCH2_defined_noCarbon with Mixed culture; Microbacterium sp. AnTP90 3:1 starting OD to Klebsiella and Glu_DLac_Acetate_mix 1 x remove 2,873,948 - BWI76_RS13780 0.54 -3.0 2,874,219 - BWI76_RS13780 0.71 -0.1 2,874,222 + BWI76_RS13780 0.71 +0.3 2,874,256 + BWI76_RS13780 0.73 +0.8 2,874,256 + BWI76_RS13780 0.73 +0.6 2,874,266 + BWI76_RS13780 0.74 -0.1 2,874,278 - BWI76_RS13780 0.74 +1.1 2,874,387 - BWI76_RS13780 0.81 +0.9 2,874,987 - BWI76_RS13785 0.35 -0.6 2,875,108 + BWI76_RS13785 0.50 -2.9 2,875,640 - BWI76_RS13790 0.11 +0.4 2,875,700 - BWI76_RS13790 0.18 +0.8 2,875,855 + BWI76_RS13790 0.34 -0.6 2,875,877 + BWI76_RS13790 0.36 -4.0 2,875,877 + BWI76_RS13790 0.36 +0.8 2,875,885 - BWI76_RS13790 0.37 +0.3 2,875,885 - BWI76_RS13790 0.37 +0.6 2,875,994 + BWI76_RS13790 0.49 +0.9 2,876,486 + +0.3 2,876,494 - -0.9
Or see this region's nucleotide sequence