Experiment: RCH2_defined_noCarbon with Mixed culture; Microbacterium sp. AnTP90 3:1 starting OD to Klebsiella and Glu_DLac_Acetate_mix 1 x
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt BWI76_RS08390 and BWI76_RS08395 overlap by 17 nucleotides BWI76_RS08395 and BWI76_RS08400 overlap by 7 nucleotides BWI76_RS08400 and BWI76_RS08405 overlap by 1 nucleotides BWI76_RS08405 and BWI76_RS08410 are separated by 15 nucleotides
BWI76_RS08390: BWI76_RS08390 - hypothetical protein, at 1,775,399 to 1,775,617
_RS08390
BWI76_RS08395: BWI76_RS08395 - succinate dehydrogenase cytochrome b556 large subunit, at 1,775,601 to 1,776,005
_RS08395
BWI76_RS08400: BWI76_RS08400 - succinate dehydrogenase cytochrome b556 small membrane subunit, at 1,775,999 to 1,776,346
_RS08400
BWI76_RS08405: BWI76_RS08405 - succinate dehydrogenase flavoprotein subunit, at 1,776,346 to 1,778,112
_RS08405
BWI76_RS08410: BWI76_RS08410 - succinate dehydrogenase iron-sulfur subunit, at 1,778,128 to 1,778,844
_RS08410
Position (kb) 1776
1777
1778
1779 Strain fitness (log2 ratio) -3
-2
-1
0
1 at 1775.450 kb on + strand, within BWI76_RS08390 at 1775.461 kb on - strand, within BWI76_RS08390 at 1775.658 kb on - strand at 1775.929 kb on - strand, within BWI76_RS08395 at 1776.180 kb on - strand, within BWI76_RS08400 at 1776.331 kb on + strand at 1776.374 kb on - strand at 1776.384 kb on - strand at 1776.438 kb on + strand at 1776.569 kb on + strand, within BWI76_RS08405 at 1776.836 kb on + strand, within BWI76_RS08405 at 1776.973 kb on - strand, within BWI76_RS08405 at 1777.484 kb on + strand, within BWI76_RS08405 at 1777.793 kb on + strand, within BWI76_RS08405 at 1778.846 kb on - strand at 1778.981 kb on + strand at 1779.007 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction RCH2_defined_noCarbon with Mixed culture; Microbacterium sp. AnTP90 3:1 starting OD to Klebsiella and Glu_DLac_Acetate_mix 1 x remove 1,775,450 + BWI76_RS08390 0.23 -0.3 1,775,461 - BWI76_RS08390 0.28 -2.4 1,775,658 - +1.0 1,775,929 - BWI76_RS08395 0.81 -2.8 1,776,180 - BWI76_RS08400 0.52 -0.5 1,776,331 + +0.2 1,776,374 - +1.0 1,776,384 - -1.8 1,776,438 + -1.5 1,776,569 + BWI76_RS08405 0.13 -1.7 1,776,836 + BWI76_RS08405 0.28 -0.3 1,776,973 - BWI76_RS08405 0.35 -3.0 1,777,484 + BWI76_RS08405 0.64 -1.5 1,777,793 + BWI76_RS08405 0.82 -1.3 1,778,846 - -1.0 1,778,981 + +0.5 1,779,007 + -2.0
Or see this region's nucleotide sequence