Experiment: RCH2_defined_noCarbon with Mixed culture; Microbacterium sp. AnTP90 3:1 starting OD to Klebsiella and Glu_DLac_Acetate_mix 1 x
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt BWI76_RS07670 and BWI76_RS07675 are separated by 363 nucleotides BWI76_RS07675 and BWI76_RS07680 are separated by 364 nucleotides
BWI76_RS07670: BWI76_RS07670 - carbohydrate kinase, at 1,624,140 to 1,625,660
_RS07670
BWI76_RS07675: BWI76_RS07675 - DeoR family transcriptional regulator, at 1,626,024 to 1,626,974
_RS07675
BWI76_RS07680: BWI76_RS07680 - transketolase, at 1,627,339 to 1,628,169
_RS07680
Position (kb)
1626
1627 Strain fitness (log2 ratio)
-3
-2
-1
0
1 at 1625.165 kb on - strand, within BWI76_RS07670 at 1625.253 kb on - strand, within BWI76_RS07670 at 1625.289 kb on - strand, within BWI76_RS07670 at 1625.305 kb on - strand, within BWI76_RS07670 at 1625.501 kb on - strand, within BWI76_RS07670 at 1625.503 kb on + strand, within BWI76_RS07670 at 1625.740 kb on - strand at 1625.883 kb on - strand at 1626.201 kb on + strand, within BWI76_RS07675 at 1626.433 kb on - strand, within BWI76_RS07675 at 1626.445 kb on - strand, within BWI76_RS07675 at 1626.746 kb on + strand, within BWI76_RS07675 at 1626.824 kb on - strand, within BWI76_RS07675 at 1626.905 kb on + strand at 1626.927 kb on - strand at 1627.011 kb on - strand at 1627.181 kb on - strand at 1627.204 kb on + strand at 1627.251 kb on - strand at 1627.388 kb on - strand at 1627.482 kb on + strand, within BWI76_RS07680 at 1627.564 kb on - strand, within BWI76_RS07680 at 1627.817 kb on - strand, within BWI76_RS07680
Per-strain Table
Position Strand Gene LocusTag Fraction RCH2_defined_noCarbon with Mixed culture; Microbacterium sp. AnTP90 3:1 starting OD to Klebsiella and Glu_DLac_Acetate_mix 1 x remove 1,625,165 - BWI76_RS07670 0.67 -1.3 1,625,253 - BWI76_RS07670 0.73 +0.1 1,625,289 - BWI76_RS07670 0.76 -1.5 1,625,305 - BWI76_RS07670 0.77 +0.2 1,625,501 - BWI76_RS07670 0.89 +1.4 1,625,503 + BWI76_RS07670 0.90 -1.5 1,625,740 - +0.6 1,625,883 - +0.5 1,626,201 + BWI76_RS07675 0.19 -2.0 1,626,433 - BWI76_RS07675 0.43 -2.2 1,626,445 - BWI76_RS07675 0.44 -2.8 1,626,746 + BWI76_RS07675 0.76 -2.1 1,626,824 - BWI76_RS07675 0.84 +0.2 1,626,905 + +1.1 1,626,927 - +0.7 1,627,011 - +0.6 1,627,181 - +0.7 1,627,204 + -2.8 1,627,251 - +0.0 1,627,388 - +0.2 1,627,482 + BWI76_RS07680 0.17 -0.9 1,627,564 - BWI76_RS07680 0.27 +0.2 1,627,817 - BWI76_RS07680 0.58 +0.4
Or see this region's nucleotide sequence