Strain Fitness in Desulfovibrio vulgaris Hildenborough JW710 around DVU0074

Experiment: MoLS4 with Thymine (N)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDVU0073 and DVU0074 overlap by 13 nucleotidesDVU0074 and rfbE are separated by 333 nucleotides DVU0073: DVU0073 - CDP-glucose-4,6-dehydratase, putative (TIGR), at 89,894 to 91,000 DVU0073 DVU0074: DVU0074 - polysaccharide biosynthesis domain protein (TIGR), at 90,988 to 91,431 DVU0074 DVU0075: rfbE - aminotransferase, DegT/DnrJ/EryC1/StrS family (TIGR), at 91,765 to 92,898 rfbE Position (kb) 90 91 92Strain fitness (log2 ratio) -2 -1 0 1 2at 91.091 kb on - strand, within DVU0074at 91.125 kb on - strand, within DVU0074at 91.170 kb on - strand, within DVU0074at 91.191 kb on + strand, within DVU0074at 91.191 kb on + strand, within DVU0074at 91.191 kb on + strand, within DVU0074at 91.199 kb on - strand, within DVU0074at 91.199 kb on - strand, within DVU0074at 91.199 kb on - strand, within DVU0074at 91.246 kb on + strand, within DVU0074at 91.381 kb on - strand, within DVU0074at 91.459 kb on - strandat 91.497 kb on + strandat 91.520 kb on + strandat 91.520 kb on + strandat 91.562 kb on + strandat 91.570 kb on - strandat 91.585 kb on - strandat 91.585 kb on - strandat 91.599 kb on - strandat 91.611 kb on + strandat 91.619 kb on - strandat 91.637 kb on - strandat 91.664 kb on + strandat 91.728 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction MoLS4 with Thymine (N)
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91,091 - DVU0074 0.23 -0.1
91,125 - DVU0074 0.31 -1.4
91,170 - DVU0074 0.41 -0.5
91,191 + DVU0074 0.46 -1.7
91,191 + DVU0074 0.46 -1.0
91,191 + DVU0074 0.46 -2.1
91,199 - DVU0074 0.48 -0.5
91,199 - DVU0074 0.48 -0.6
91,199 - DVU0074 0.48 +2.1
91,246 + DVU0074 0.58 +1.1
91,381 - DVU0074 0.89 -0.6
91,459 - -0.3
91,497 + +1.5
91,520 + -0.7
91,520 + +0.3
91,562 + -0.8
91,570 - -1.2
91,585 - +0.5
91,585 - -0.9
91,599 - -0.1
91,611 + -0.5
91,619 - +0.5
91,637 - +0.3
91,664 + -0.3
91,728 - -0.1

Or see this region's nucleotide sequence