Strain Fitness in Desulfovibrio vulgaris Hildenborough JW710 around DVU2984

Experiment: MoLS4 with Thymine (N)

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntleuC and leuD are separated by 17 nucleotidesleuD and DVU2984 are separated by 2 nucleotidesDVU2984 and leuB are separated by 29 nucleotides DVU2982: leuC - 3-isopropylmalate dehydratase / (R)-citramalate isomerase, large subunit LeuC (EC 4.2.1.33; EC 4.2.1.35) (from data), at 3,089,372 to 3,090,631 leuC DVU2983: leuD - 3-isopropylmalate dehydratase / (R)-citramalate isomerase, small subunit LeuD (EC 4.2.1.33; EC 4.2.1.35) (from data), at 3,090,649 to 3,091,152 leuD DVU2984: DVU2984 - conserved hypothetical protein (TIGR), at 3,091,155 to 3,092,162 DVU2984 DVU2985: leuB - 3-isopropylmalate dehydrogenase (TIGR), at 3,092,192 to 3,093,265 leuB Position (kb) 3091 3092 3093Strain fitness (log2 ratio) -6 -5 -4 -3 -2 -1 0 1at 3090.164 kb on - strand, within leuCat 3090.178 kb on - strand, within leuCat 3090.348 kb on + strand, within leuCat 3090.412 kb on - strand, within leuCat 3090.565 kb on + strandat 3090.616 kb on + strandat 3090.618 kb on + strandat 3090.624 kb on - strandat 3090.766 kb on - strand, within leuDat 3090.777 kb on + strand, within leuDat 3090.787 kb on - strand, within leuDat 3090.939 kb on - strand, within leuDat 3091.059 kb on - strand, within leuDat 3091.066 kb on + strand, within leuDat 3091.074 kb on - strand, within leuDat 3091.114 kb on + strandat 3091.269 kb on - strand, within DVU2984at 3091.291 kb on - strand, within DVU2984at 3091.355 kb on + strand, within DVU2984at 3091.402 kb on - strand, within DVU2984at 3091.464 kb on + strand, within DVU2984at 3091.472 kb on - strand, within DVU2984at 3091.504 kb on + strand, within DVU2984at 3091.569 kb on + strand, within DVU2984at 3091.709 kb on - strand, within DVU2984at 3091.716 kb on - strand, within DVU2984at 3091.828 kb on - strand, within DVU2984at 3091.870 kb on + strand, within DVU2984at 3091.878 kb on + strand, within DVU2984at 3091.918 kb on + strand, within DVU2984at 3091.923 kb on + strand, within DVU2984at 3091.931 kb on - strand, within DVU2984at 3091.968 kb on + strand, within DVU2984at 3092.003 kb on + strand, within DVU2984at 3092.027 kb on + strand, within DVU2984at 3092.034 kb on + strand, within DVU2984at 3092.203 kb on + strandat 3092.261 kb on - strandat 3092.323 kb on - strand, within leuBat 3092.396 kb on + strand, within leuBat 3092.396 kb on + strand, within leuBat 3092.402 kb on - strand, within leuBat 3092.440 kb on - strand, within leuBat 3092.484 kb on + strand, within leuBat 3092.519 kb on - strand, within leuBat 3092.558 kb on + strand, within leuBat 3092.566 kb on - strand, within leuBat 3092.680 kb on - strand, within leuBat 3092.725 kb on - strand, within leuBat 3092.727 kb on + strand, within leuBat 3092.749 kb on + strand, within leuBat 3092.749 kb on + strand, within leuBat 3092.897 kb on - strand, within leuBat 3092.905 kb on - strand, within leuBat 3092.931 kb on - strand, within leuBat 3092.990 kb on + strand, within leuBat 3093.019 kb on + strand, within leuBat 3093.061 kb on + strand, within leuBat 3093.061 kb on + strand, within leuBat 3093.061 kb on + strand, within leuBat 3093.061 kb on + strand, within leuBat 3093.061 kb on + strand, within leuBat 3093.061 kb on + strand, within leuBat 3093.067 kb on + strand, within leuBat 3093.069 kb on - strand, within leuBat 3093.069 kb on - strand, within leuBat 3093.069 kb on - strand, within leuBat 3093.069 kb on - strand, within leuBat 3093.069 kb on - strand, within leuBat 3093.075 kb on - strand, within leuBat 3093.117 kb on + strand, within leuB

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction MoLS4 with Thymine (N)
remove
3,090,164 - leuC DVU2982 0.63 -3.8
3,090,178 - leuC DVU2982 0.64 -1.7
3,090,348 + leuC DVU2982 0.77 -3.4
3,090,412 - leuC DVU2982 0.83 -2.8
3,090,565 + -1.1
3,090,616 + +1.3
3,090,618 + -4.3
3,090,624 - -1.1
3,090,766 - leuD DVU2983 0.23 -5.4
3,090,777 + leuD DVU2983 0.25 -4.0
3,090,787 - leuD DVU2983 0.27 -3.7
3,090,939 - leuD DVU2983 0.58 -4.3
3,091,059 - leuD DVU2983 0.81 -4.5
3,091,066 + leuD DVU2983 0.83 -3.2
3,091,074 - leuD DVU2983 0.84 -1.1
3,091,114 + -3.1
3,091,269 - DVU2984 0.11 -4.1
3,091,291 - DVU2984 0.13 -4.3
3,091,355 + DVU2984 0.20 -0.6
3,091,402 - DVU2984 0.25 -5.6
3,091,464 + DVU2984 0.31 -3.3
3,091,472 - DVU2984 0.31 -3.5
3,091,504 + DVU2984 0.35 -4.4
3,091,569 + DVU2984 0.41 -1.7
3,091,709 - DVU2984 0.55 -3.1
3,091,716 - DVU2984 0.56 -1.1
3,091,828 - DVU2984 0.67 -1.8
3,091,870 + DVU2984 0.71 -0.2
3,091,878 + DVU2984 0.72 -3.1
3,091,918 + DVU2984 0.76 -1.5
3,091,923 + DVU2984 0.76 -1.4
3,091,931 - DVU2984 0.77 +0.5
3,091,968 + DVU2984 0.81 -0.8
3,092,003 + DVU2984 0.84 +1.5
3,092,027 + DVU2984 0.87 +1.5
3,092,034 + DVU2984 0.87 -0.5
3,092,203 + -0.5
3,092,261 - -3.6
3,092,323 - leuB DVU2985 0.12 -4.5
3,092,396 + leuB DVU2985 0.19 -3.4
3,092,396 + leuB DVU2985 0.19 -2.1
3,092,402 - leuB DVU2985 0.20 -3.1
3,092,440 - leuB DVU2985 0.23 -3.8
3,092,484 + leuB DVU2985 0.27 -2.1
3,092,519 - leuB DVU2985 0.30 -1.5
3,092,558 + leuB DVU2985 0.34 -0.8
3,092,566 - leuB DVU2985 0.35 -2.9
3,092,680 - leuB DVU2985 0.45 -0.5
3,092,725 - leuB DVU2985 0.50 -4.2
3,092,727 + leuB DVU2985 0.50 -4.1
3,092,749 + leuB DVU2985 0.52 -6.5
3,092,749 + leuB DVU2985 0.52 -3.3
3,092,897 - leuB DVU2985 0.66 -5.2
3,092,905 - leuB DVU2985 0.66 -0.5
3,092,931 - leuB DVU2985 0.69 -4.2
3,092,990 + leuB DVU2985 0.74 -4.0
3,093,019 + leuB DVU2985 0.77 -1.1
3,093,061 + leuB DVU2985 0.81 -1.1
3,093,061 + leuB DVU2985 0.81 -3.8
3,093,061 + leuB DVU2985 0.81 -3.8
3,093,061 + leuB DVU2985 0.81 -2.2
3,093,061 + leuB DVU2985 0.81 -2.8
3,093,061 + leuB DVU2985 0.81 -3.5
3,093,067 + leuB DVU2985 0.81 -2.4
3,093,069 - leuB DVU2985 0.82 -3.5
3,093,069 - leuB DVU2985 0.82 -4.0
3,093,069 - leuB DVU2985 0.82 -4.9
3,093,069 - leuB DVU2985 0.82 -1.1
3,093,069 - leuB DVU2985 0.82 +1.5
3,093,075 - leuB DVU2985 0.82 -3.3
3,093,117 + leuB DVU2985 0.86 -4.9

Or see this region's nucleotide sequence