Strain Fitness in Desulfovibrio vulgaris Hildenborough JW710 around DVU2530

Experiment: MoLS4 with Thymine (N)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntpgk and tkt are separated by 136 nucleotidestkt and rpe are separated by 90 nucleotidesrpe and DVU2532 are separated by 47 nucleotides DVU2529: pgk - phosphoglycerate kinase (TIGR), at 2,639,592 to 2,640,773 pgk DVU2530: tkt - transketolase (TIGR), at 2,640,910 to 2,642,904 tkt DVU2531: rpe - ribulose-phosphate 3-epimerase (TIGR), at 2,642,995 to 2,643,663 rpe DVU2532: DVU2532 - transcriptional regulator, MerR family (TIGR), at 2,643,711 to 2,644,094 DVU2532 Position (kb) 2640 2641 2642 2643Strain fitness (log2 ratio) -2 -1 0 1at 2640.937 kb on - strandat 2642.958 kb on - strandat 2643.845 kb on + strand, within DVU2532at 2643.893 kb on + strand, within DVU2532at 2643.901 kb on - strand, within DVU2532

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Per-strain Table

Position Strand Gene LocusTag Fraction MoLS4 with Thymine (N)
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2,640,937 - +0.4
2,642,958 - -0.7
2,643,845 + DVU2532 0.35 -2.1
2,643,893 + DVU2532 0.47 -0.0
2,643,901 - DVU2532 0.49 +1.0

Or see this region's nucleotide sequence