Strain Fitness in Pseudomonas fluorescens SBW25-INTG around PFLU_RS24280

Experiment: L-Glutamine (C)(N); with MOPS

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPFLU_RS24275 and PFLU_RS24280 overlap by 7 nucleotidesPFLU_RS24280 and PFLU_RS24285 are separated by 286 nucleotides PFLU_RS24275: PFLU_RS24275 - sensor histidine kinase, at 5,434,747 to 5,436,513 _RS24275 PFLU_RS24280: PFLU_RS24280 - sigma-54-dependent Fis family transcriptional regulator, at 5,436,507 to 5,437,832 _RS24280 PFLU_RS24285: PFLU_RS24285 - MFS transporter, at 5,438,119 to 5,439,438 _RS24285 Position (kb) 5436 5437 5438Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3 4at 5435.560 kb on + strand, within PFLU_RS24275at 5435.560 kb on + strand, within PFLU_RS24275at 5435.560 kb on + strand, within PFLU_RS24275at 5435.560 kb on + strand, within PFLU_RS24275at 5435.560 kb on + strand, within PFLU_RS24275at 5435.560 kb on + strand, within PFLU_RS24275at 5435.560 kb on + strand, within PFLU_RS24275at 5435.560 kb on + strand, within PFLU_RS24275at 5435.560 kb on + strand, within PFLU_RS24275at 5435.560 kb on + strand, within PFLU_RS24275at 5435.561 kb on - strand, within PFLU_RS24275at 5435.561 kb on - strand, within PFLU_RS24275at 5435.561 kb on - strand, within PFLU_RS24275at 5435.561 kb on - strand, within PFLU_RS24275at 5435.561 kb on - strand, within PFLU_RS24275at 5435.561 kb on - strand, within PFLU_RS24275at 5435.561 kb on - strand, within PFLU_RS24275at 5435.561 kb on - strand, within PFLU_RS24275at 5435.561 kb on - strand, within PFLU_RS24275at 5435.561 kb on - strand, within PFLU_RS24275at 5435.561 kb on - strand, within PFLU_RS24275at 5435.561 kb on - strand, within PFLU_RS24275at 5435.793 kb on + strand, within PFLU_RS24275at 5435.918 kb on + strand, within PFLU_RS24275at 5435.919 kb on - strand, within PFLU_RS24275at 5435.950 kb on + strand, within PFLU_RS24275at 5435.950 kb on + strand, within PFLU_RS24275at 5435.950 kb on + strand, within PFLU_RS24275at 5435.951 kb on - strand, within PFLU_RS24275at 5435.951 kb on - strand, within PFLU_RS24275at 5435.951 kb on - strand, within PFLU_RS24275at 5436.128 kb on + strand, within PFLU_RS24275at 5436.129 kb on - strand, within PFLU_RS24275at 5436.129 kb on - strand, within PFLU_RS24275at 5436.129 kb on - strand, within PFLU_RS24275at 5436.403 kb on + strandat 5436.403 kb on + strandat 5436.403 kb on + strandat 5436.403 kb on + strandat 5436.403 kb on + strandat 5436.403 kb on + strandat 5436.403 kb on + strandat 5436.403 kb on + strandat 5436.403 kb on + strandat 5436.404 kb on - strandat 5436.408 kb on + strandat 5436.545 kb on + strandat 5436.546 kb on - strandat 5436.546 kb on - strandat 5436.799 kb on - strand, within PFLU_RS24280at 5437.206 kb on + strand, within PFLU_RS24280at 5437.207 kb on - strand, within PFLU_RS24280at 5437.325 kb on + strand, within PFLU_RS24280at 5437.325 kb on + strand, within PFLU_RS24280at 5437.325 kb on + strand, within PFLU_RS24280at 5437.326 kb on - strand, within PFLU_RS24280at 5437.326 kb on - strand, within PFLU_RS24280at 5437.326 kb on - strand, within PFLU_RS24280at 5437.730 kb on + strandat 5437.730 kb on + strandat 5437.730 kb on + strandat 5437.731 kb on - strandat 5437.731 kb on - strandat 5437.731 kb on - strandat 5437.731 kb on - strandat 5437.830 kb on + strandat 5437.830 kb on + strandat 5437.830 kb on + strandat 5437.831 kb on - strandat 5437.831 kb on - strandat 5437.949 kb on + strandat 5438.001 kb on - strandat 5438.001 kb on - strandat 5438.010 kb on + strandat 5438.011 kb on - strandat 5438.020 kb on - strandat 5438.020 kb on - strandat 5438.055 kb on + strandat 5438.056 kb on - strandat 5438.057 kb on + strandat 5438.091 kb on + strandat 5438.092 kb on - strandat 5438.101 kb on + strandat 5438.101 kb on + strandat 5438.101 kb on + strandat 5438.101 kb on + strandat 5438.101 kb on + strandat 5438.101 kb on + strandat 5438.101 kb on + strandat 5438.101 kb on + strandat 5438.101 kb on + strandat 5438.101 kb on + strandat 5438.101 kb on + strandat 5438.101 kb on + strandat 5438.101 kb on + strandat 5438.101 kb on + strandat 5438.101 kb on + strandat 5438.101 kb on + strandat 5438.101 kb on + strandat 5438.101 kb on + strandat 5438.101 kb on + strandat 5438.102 kb on - strandat 5438.102 kb on - strandat 5438.102 kb on - strandat 5438.102 kb on - strandat 5438.102 kb on - strandat 5438.102 kb on - strandat 5438.102 kb on - strandat 5438.102 kb on - strandat 5438.102 kb on - strandat 5438.102 kb on - strandat 5438.102 kb on - strandat 5438.102 kb on - strandat 5438.102 kb on - strandat 5438.102 kb on - strandat 5438.102 kb on - strandat 5438.102 kb on - strandat 5438.102 kb on - strandat 5438.102 kb on - strandat 5438.102 kb on - strandat 5438.102 kb on - strandat 5438.102 kb on - strandat 5438.102 kb on - strandat 5438.102 kb on - strandat 5438.124 kb on + strandat 5438.124 kb on + strandat 5438.124 kb on + strandat 5438.124 kb on + strandat 5438.124 kb on + strandat 5438.125 kb on - strandat 5438.125 kb on - strandat 5438.236 kb on + strandat 5438.237 kb on - strandat 5438.237 kb on - strandat 5438.237 kb on - strandat 5438.245 kb on + strandat 5438.245 kb on + strandat 5438.245 kb on + strandat 5438.246 kb on - strandat 5438.246 kb on - strandat 5438.246 kb on - strandat 5438.251 kb on + strand, within PFLU_RS24285at 5438.252 kb on - strand, within PFLU_RS24285at 5438.269 kb on + strand, within PFLU_RS24285at 5438.270 kb on - strand, within PFLU_RS24285at 5438.270 kb on - strand, within PFLU_RS24285at 5438.270 kb on - strand, within PFLU_RS24285at 5438.270 kb on - strand, within PFLU_RS24285at 5438.386 kb on + strand, within PFLU_RS24285at 5438.386 kb on + strand, within PFLU_RS24285at 5438.386 kb on + strand, within PFLU_RS24285at 5438.387 kb on - strand, within PFLU_RS24285at 5438.387 kb on - strand, within PFLU_RS24285at 5438.387 kb on - strand, within PFLU_RS24285at 5438.387 kb on - strand, within PFLU_RS24285at 5438.406 kb on + strand, within PFLU_RS24285at 5438.406 kb on + strand, within PFLU_RS24285at 5438.406 kb on + strand, within PFLU_RS24285at 5438.407 kb on - strand, within PFLU_RS24285at 5438.407 kb on - strand, within PFLU_RS24285at 5438.407 kb on - strand, within PFLU_RS24285at 5438.431 kb on + strand, within PFLU_RS24285at 5438.431 kb on + strand, within PFLU_RS24285at 5438.432 kb on - strand, within PFLU_RS24285at 5438.432 kb on - strand, within PFLU_RS24285at 5438.477 kb on - strand, within PFLU_RS24285at 5438.513 kb on + strand, within PFLU_RS24285at 5438.514 kb on - strand, within PFLU_RS24285at 5438.514 kb on - strand, within PFLU_RS24285at 5438.514 kb on - strand, within PFLU_RS24285at 5438.514 kb on - strand, within PFLU_RS24285at 5438.514 kb on - strand, within PFLU_RS24285at 5438.514 kb on - strand, within PFLU_RS24285at 5438.554 kb on + strand, within PFLU_RS24285at 5438.572 kb on + strand, within PFLU_RS24285at 5438.572 kb on + strand, within PFLU_RS24285at 5438.572 kb on + strand, within PFLU_RS24285at 5438.572 kb on + strand, within PFLU_RS24285at 5438.572 kb on + strand, within PFLU_RS24285at 5438.572 kb on + strand, within PFLU_RS24285at 5438.572 kb on + strand, within PFLU_RS24285at 5438.573 kb on - strand, within PFLU_RS24285at 5438.573 kb on - strand, within PFLU_RS24285at 5438.573 kb on - strand, within PFLU_RS24285at 5438.611 kb on + strand, within PFLU_RS24285at 5438.611 kb on + strand, within PFLU_RS24285at 5438.626 kb on + strand, within PFLU_RS24285at 5438.626 kb on + strand, within PFLU_RS24285at 5438.627 kb on - strand, within PFLU_RS24285at 5438.627 kb on - strand, within PFLU_RS24285at 5438.627 kb on - strand, within PFLU_RS24285at 5438.627 kb on - strand, within PFLU_RS24285at 5438.627 kb on - strand, within PFLU_RS24285at 5438.707 kb on + strand, within PFLU_RS24285at 5438.707 kb on + strand, within PFLU_RS24285at 5438.707 kb on + strand, within PFLU_RS24285at 5438.707 kb on + strand, within PFLU_RS24285at 5438.707 kb on + strand, within PFLU_RS24285at 5438.707 kb on + strand, within PFLU_RS24285at 5438.707 kb on + strand, within PFLU_RS24285at 5438.707 kb on + strand, within PFLU_RS24285at 5438.707 kb on + strand, within PFLU_RS24285at 5438.707 kb on + strand, within PFLU_RS24285at 5438.707 kb on + strand, within PFLU_RS24285at 5438.707 kb on + strand, within PFLU_RS24285at 5438.707 kb on + strand, within PFLU_RS24285at 5438.707 kb on + strand, within PFLU_RS24285at 5438.707 kb on + strand, within PFLU_RS24285at 5438.707 kb on + strand, within PFLU_RS24285at 5438.707 kb on + strand, within PFLU_RS24285at 5438.707 kb on + strand, within PFLU_RS24285at 5438.707 kb on + strand, within PFLU_RS24285at 5438.707 kb on + strand, within PFLU_RS24285at 5438.708 kb on - strand, within PFLU_RS24285at 5438.708 kb on - strand, within PFLU_RS24285at 5438.708 kb on - strand, within PFLU_RS24285at 5438.708 kb on - strand, within PFLU_RS24285at 5438.708 kb on - strand, within PFLU_RS24285at 5438.708 kb on - strand, within PFLU_RS24285at 5438.708 kb on - strand, within PFLU_RS24285at 5438.708 kb on - strand, within PFLU_RS24285at 5438.708 kb on - strand, within PFLU_RS24285at 5438.708 kb on - strand, within PFLU_RS24285at 5438.708 kb on - strand, within PFLU_RS24285at 5438.708 kb on - strand, within PFLU_RS24285at 5438.708 kb on - strand, within PFLU_RS24285at 5438.767 kb on + strand, within PFLU_RS24285at 5438.767 kb on + strand, within PFLU_RS24285at 5438.767 kb on + strand, within PFLU_RS24285at 5438.767 kb on + strand, within PFLU_RS24285at 5438.768 kb on - strand, within PFLU_RS24285at 5438.768 kb on - strand, within PFLU_RS24285at 5438.768 kb on - strand, within PFLU_RS24285at 5438.768 kb on - strand, within PFLU_RS24285

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Per-strain Table

Position Strand Gene LocusTag Fraction L-Glutamine (C)(N); with MOPS
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5,435,560 + PFLU_RS24275 0.46 -0.4
5,435,560 + PFLU_RS24275 0.46 +0.4
5,435,560 + PFLU_RS24275 0.46 -0.2
5,435,560 + PFLU_RS24275 0.46 +0.1
5,435,560 + PFLU_RS24275 0.46 +2.0
5,435,560 + PFLU_RS24275 0.46 +2.4
5,435,560 + PFLU_RS24275 0.46 +0.5
5,435,560 + PFLU_RS24275 0.46 +0.2
5,435,560 + PFLU_RS24275 0.46 -0.2
5,435,560 + PFLU_RS24275 0.46 +0.9
5,435,561 - PFLU_RS24275 0.46 -0.6
5,435,561 - PFLU_RS24275 0.46 -0.3
5,435,561 - PFLU_RS24275 0.46 +0.6
5,435,561 - PFLU_RS24275 0.46 -0.4
5,435,561 - PFLU_RS24275 0.46 +0.4
5,435,561 - PFLU_RS24275 0.46 -0.3
5,435,561 - PFLU_RS24275 0.46 +0.2
5,435,561 - PFLU_RS24275 0.46 -0.5
5,435,561 - PFLU_RS24275 0.46 +0.4
5,435,561 - PFLU_RS24275 0.46 +0.2
5,435,561 - PFLU_RS24275 0.46 +0.1
5,435,561 - PFLU_RS24275 0.46 -0.3
5,435,793 + PFLU_RS24275 0.59 -1.4
5,435,918 + PFLU_RS24275 0.66 +0.0
5,435,919 - PFLU_RS24275 0.66 -0.9
5,435,950 + PFLU_RS24275 0.68 -0.7
5,435,950 + PFLU_RS24275 0.68 +0.6
5,435,950 + PFLU_RS24275 0.68 +0.6
5,435,951 - PFLU_RS24275 0.68 +0.5
5,435,951 - PFLU_RS24275 0.68 +0.1
5,435,951 - PFLU_RS24275 0.68 +0.0
5,436,128 + PFLU_RS24275 0.78 -1.7
5,436,129 - PFLU_RS24275 0.78 -1.1
5,436,129 - PFLU_RS24275 0.78 -0.4
5,436,129 - PFLU_RS24275 0.78 +0.2
5,436,403 + +0.2
5,436,403 + -0.3
5,436,403 + +0.2
5,436,403 + +0.7
5,436,403 + -1.3
5,436,403 + +0.6
5,436,403 + -2.2
5,436,403 + +0.5
5,436,403 + +0.2
5,436,404 - -0.3
5,436,408 + -0.6
5,436,545 + +0.6
5,436,546 - +0.3
5,436,546 - -1.8
5,436,799 - PFLU_RS24280 0.22 +0.2
5,437,206 + PFLU_RS24280 0.53 -0.0
5,437,207 - PFLU_RS24280 0.53 -0.6
5,437,325 + PFLU_RS24280 0.62 -0.9
5,437,325 + PFLU_RS24280 0.62 -0.8
5,437,325 + PFLU_RS24280 0.62 -1.0
5,437,326 - PFLU_RS24280 0.62 +0.8
5,437,326 - PFLU_RS24280 0.62 -0.2
5,437,326 - PFLU_RS24280 0.62 -0.2
5,437,730 + +0.3
5,437,730 + -1.3
5,437,730 + +0.1
5,437,731 - +2.4
5,437,731 - +0.6
5,437,731 - -1.2
5,437,731 - +0.0
5,437,830 + -0.0
5,437,830 + +0.8
5,437,830 + +0.2
5,437,831 - +0.2
5,437,831 - +0.2
5,437,949 + +1.1
5,438,001 - -0.8
5,438,001 - +0.1
5,438,010 + -0.7
5,438,011 - +0.0
5,438,020 - +0.0
5,438,020 - -1.5
5,438,055 + -0.8
5,438,056 - -0.0
5,438,057 + +1.5
5,438,091 + -0.3
5,438,092 - -1.2
5,438,101 + -1.0
5,438,101 + +1.0
5,438,101 + -0.0
5,438,101 + -0.3
5,438,101 + -0.2
5,438,101 + +0.2
5,438,101 + -0.6
5,438,101 + -0.6
5,438,101 + -1.6
5,438,101 + -0.0
5,438,101 + -1.2
5,438,101 + +1.4
5,438,101 + +1.0
5,438,101 + +0.2
5,438,101 + -0.0
5,438,101 + -0.2
5,438,101 + -0.2
5,438,101 + +0.0
5,438,101 + +0.7
5,438,102 - -0.8
5,438,102 - -0.3
5,438,102 - +0.1
5,438,102 - +1.3
5,438,102 - +0.5
5,438,102 - -0.1
5,438,102 - +0.5
5,438,102 - -0.3
5,438,102 - +1.7
5,438,102 - +0.3
5,438,102 - +1.7
5,438,102 - -0.1
5,438,102 - -0.8
5,438,102 - +0.7
5,438,102 - +0.3
5,438,102 - -0.1
5,438,102 - -0.0
5,438,102 - +0.5
5,438,102 - -0.4
5,438,102 - +0.1
5,438,102 - +1.7
5,438,102 - +1.1
5,438,102 - -0.8
5,438,124 + -0.0
5,438,124 + -1.3
5,438,124 + +0.5
5,438,124 + +1.3
5,438,124 + -1.1
5,438,125 - +0.8
5,438,125 - -0.4
5,438,236 + +0.1
5,438,237 - +0.2
5,438,237 - +1.0
5,438,237 - -0.6
5,438,245 + +0.8
5,438,245 + +0.3
5,438,245 + -0.9
5,438,246 - +1.6
5,438,246 - +0.2
5,438,246 - -0.2
5,438,251 + PFLU_RS24285 0.10 +0.1
5,438,252 - PFLU_RS24285 0.10 +0.2
5,438,269 + PFLU_RS24285 0.11 +4.3
5,438,270 - PFLU_RS24285 0.11 +0.8
5,438,270 - PFLU_RS24285 0.11 +0.8
5,438,270 - PFLU_RS24285 0.11 -1.9
5,438,270 - PFLU_RS24285 0.11 -0.2
5,438,386 + PFLU_RS24285 0.20 -0.7
5,438,386 + PFLU_RS24285 0.20 -0.5
5,438,386 + PFLU_RS24285 0.20 +0.5
5,438,387 - PFLU_RS24285 0.20 +1.0
5,438,387 - PFLU_RS24285 0.20 -0.0
5,438,387 - PFLU_RS24285 0.20 +0.1
5,438,387 - PFLU_RS24285 0.20 -0.4
5,438,406 + PFLU_RS24285 0.22 +0.1
5,438,406 + PFLU_RS24285 0.22 -0.1
5,438,406 + PFLU_RS24285 0.22 -1.0
5,438,407 - PFLU_RS24285 0.22 +0.2
5,438,407 - PFLU_RS24285 0.22 -0.2
5,438,407 - PFLU_RS24285 0.22 +0.2
5,438,431 + PFLU_RS24285 0.24 +1.0
5,438,431 + PFLU_RS24285 0.24 -0.3
5,438,432 - PFLU_RS24285 0.24 -0.8
5,438,432 - PFLU_RS24285 0.24 +0.2
5,438,477 - PFLU_RS24285 0.27 +1.4
5,438,513 + PFLU_RS24285 0.30 -0.3
5,438,514 - PFLU_RS24285 0.30 +0.0
5,438,514 - PFLU_RS24285 0.30 -0.5
5,438,514 - PFLU_RS24285 0.30 +0.8
5,438,514 - PFLU_RS24285 0.30 +0.6
5,438,514 - PFLU_RS24285 0.30 +0.5
5,438,514 - PFLU_RS24285 0.30 +0.2
5,438,554 + PFLU_RS24285 0.33 +0.3
5,438,572 + PFLU_RS24285 0.34 -0.9
5,438,572 + PFLU_RS24285 0.34 -0.3
5,438,572 + PFLU_RS24285 0.34 -0.1
5,438,572 + PFLU_RS24285 0.34 -0.9
5,438,572 + PFLU_RS24285 0.34 -0.4
5,438,572 + PFLU_RS24285 0.34 +0.5
5,438,572 + PFLU_RS24285 0.34 +1.3
5,438,573 - PFLU_RS24285 0.34 -0.0
5,438,573 - PFLU_RS24285 0.34 -0.9
5,438,573 - PFLU_RS24285 0.34 -1.1
5,438,611 + PFLU_RS24285 0.37 -0.5
5,438,611 + PFLU_RS24285 0.37 +0.1
5,438,626 + PFLU_RS24285 0.38 -1.9
5,438,626 + PFLU_RS24285 0.38 +0.6
5,438,627 - PFLU_RS24285 0.38 +0.1
5,438,627 - PFLU_RS24285 0.38 +1.4
5,438,627 - PFLU_RS24285 0.38 -0.7
5,438,627 - PFLU_RS24285 0.38 -0.8
5,438,627 - PFLU_RS24285 0.38 -0.0
5,438,707 + PFLU_RS24285 0.45 -0.5
5,438,707 + PFLU_RS24285 0.45 +1.5
5,438,707 + PFLU_RS24285 0.45 +0.0
5,438,707 + PFLU_RS24285 0.45 +0.6
5,438,707 + PFLU_RS24285 0.45 -0.8
5,438,707 + PFLU_RS24285 0.45 -2.8
5,438,707 + PFLU_RS24285 0.45 -0.8
5,438,707 + PFLU_RS24285 0.45 +1.6
5,438,707 + PFLU_RS24285 0.45 +1.1
5,438,707 + PFLU_RS24285 0.45 +0.8
5,438,707 + PFLU_RS24285 0.45 -1.9
5,438,707 + PFLU_RS24285 0.45 +0.1
5,438,707 + PFLU_RS24285 0.45 +0.2
5,438,707 + PFLU_RS24285 0.45 -0.4
5,438,707 + PFLU_RS24285 0.45 -0.2
5,438,707 + PFLU_RS24285 0.45 +0.8
5,438,707 + PFLU_RS24285 0.45 -1.0
5,438,707 + PFLU_RS24285 0.45 +1.2
5,438,707 + PFLU_RS24285 0.45 -1.0
5,438,707 + PFLU_RS24285 0.45 -0.1
5,438,708 - PFLU_RS24285 0.45 -0.5
5,438,708 - PFLU_RS24285 0.45 +0.4
5,438,708 - PFLU_RS24285 0.45 -0.2
5,438,708 - PFLU_RS24285 0.45 -2.1
5,438,708 - PFLU_RS24285 0.45 -0.9
5,438,708 - PFLU_RS24285 0.45 -2.1
5,438,708 - PFLU_RS24285 0.45 -0.7
5,438,708 - PFLU_RS24285 0.45 -1.0
5,438,708 - PFLU_RS24285 0.45 +0.6
5,438,708 - PFLU_RS24285 0.45 +0.1
5,438,708 - PFLU_RS24285 0.45 +0.1
5,438,708 - PFLU_RS24285 0.45 +1.2
5,438,708 - PFLU_RS24285 0.45 -0.0
5,438,767 + PFLU_RS24285 0.49 -1.1
5,438,767 + PFLU_RS24285 0.49 +0.2
5,438,767 + PFLU_RS24285 0.49 +0.1
5,438,767 + PFLU_RS24285 0.49 +0.3
5,438,768 - PFLU_RS24285 0.49 +0.1
5,438,768 - PFLU_RS24285 0.49 -0.9
5,438,768 - PFLU_RS24285 0.49 -0.1
5,438,768 - PFLU_RS24285 0.49 -0.4

Or see this region's nucleotide sequence