Strain Fitness in Desulfovibrio vulgaris Hildenborough JW710 around DVU2944

Experiment: MoLS4 with Thymine (N)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntpurB and pyrE are separated by 11 nucleotidespyrE and DVU2944 are separated by 59 nucleotidesDVU2944 and DVU2945 are separated by 38 nucleotides DVU2942: purB - adenylosuccinate lyase (TIGR), at 3,045,921 to 3,047,213 purB DVU2943: pyrE - orotate phosphoribosyltransferase (TIGR), at 3,047,225 to 3,047,785 pyrE DVU2944: DVU2944 - ErfK/YbiS/YcfS/YnhG family protein (TIGR), at 3,047,845 to 3,049,134 DVU2944 DVU2945: DVU2945 - conserved domain protein (TIGR), at 3,049,173 to 3,050,030 DVU2945 Position (kb) 3047 3048 3049 3050Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 3047.939 kb on - strandat 3047.940 kb on - strandat 3047.951 kb on - strandat 3047.960 kb on + strandat 3047.968 kb on - strandat 3047.968 kb on - strandat 3047.968 kb on - strandat 3047.994 kb on - strand, within DVU2944at 3048.049 kb on + strand, within DVU2944at 3048.065 kb on - strand, within DVU2944at 3048.118 kb on - strand, within DVU2944at 3048.197 kb on + strand, within DVU2944at 3048.266 kb on + strand, within DVU2944at 3048.349 kb on - strand, within DVU2944at 3048.396 kb on - strand, within DVU2944at 3048.403 kb on + strand, within DVU2944at 3048.468 kb on + strand, within DVU2944at 3048.526 kb on + strand, within DVU2944at 3048.561 kb on + strand, within DVU2944at 3048.561 kb on + strand, within DVU2944at 3048.573 kb on + strand, within DVU2944at 3048.581 kb on - strand, within DVU2944at 3048.597 kb on - strand, within DVU2944at 3048.599 kb on + strand, within DVU2944at 3048.599 kb on + strand, within DVU2944at 3048.607 kb on - strand, within DVU2944at 3048.648 kb on + strand, within DVU2944at 3048.656 kb on - strand, within DVU2944at 3048.667 kb on - strand, within DVU2944at 3048.827 kb on + strand, within DVU2944at 3048.847 kb on - strand, within DVU2944at 3049.073 kb on + strandat 3049.147 kb on - strandat 3049.192 kb on + strandat 3049.266 kb on - strand, within DVU2945at 3049.439 kb on - strand, within DVU2945at 3049.768 kb on + strand, within DVU2945at 3049.786 kb on - strand, within DVU2945at 3049.934 kb on + strand, within DVU2945

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Per-strain Table

Position Strand Gene LocusTag Fraction MoLS4 with Thymine (N)
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3,047,939 - -1.6
3,047,940 - -0.6
3,047,951 - -2.0
3,047,960 + -2.0
3,047,968 - -1.3
3,047,968 - +1.4
3,047,968 - -0.3
3,047,994 - DVU2944 0.12 -0.1
3,048,049 + DVU2944 0.16 -1.9
3,048,065 - DVU2944 0.17 -1.9
3,048,118 - DVU2944 0.21 -0.7
3,048,197 + DVU2944 0.27 -2.0
3,048,266 + DVU2944 0.33 +0.4
3,048,349 - DVU2944 0.39 -0.9
3,048,396 - DVU2944 0.43 -0.4
3,048,403 + DVU2944 0.43 -3.1
3,048,468 + DVU2944 0.48 -2.0
3,048,526 + DVU2944 0.53 -0.2
3,048,561 + DVU2944 0.56 -1.9
3,048,561 + DVU2944 0.56 -1.8
3,048,573 + DVU2944 0.56 -1.6
3,048,581 - DVU2944 0.57 -0.8
3,048,597 - DVU2944 0.58 -1.9
3,048,599 + DVU2944 0.58 -0.2
3,048,599 + DVU2944 0.58 -0.4
3,048,607 - DVU2944 0.59 -0.5
3,048,648 + DVU2944 0.62 -1.4
3,048,656 - DVU2944 0.63 -2.3
3,048,667 - DVU2944 0.64 +1.6
3,048,827 + DVU2944 0.76 -0.2
3,048,847 - DVU2944 0.78 -0.7
3,049,073 + -2.9
3,049,147 - +0.5
3,049,192 + -0.6
3,049,266 - DVU2945 0.11 -0.3
3,049,439 - DVU2945 0.31 -1.1
3,049,768 + DVU2945 0.69 +0.9
3,049,786 - DVU2945 0.71 -0.9
3,049,934 + DVU2945 0.89 +2.4

Or see this region's nucleotide sequence