Strain Fitness in Shewanella oneidensis MR-1 around SO1428

Experiment: fumarate electron acceptor

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	fumarate electron acceptor
1,488,275	+				-1.6
1,488,309	+		SO1427	0.10	+1.3
1,488,363	+		SO1427	0.16	-3.2
1,488,365	+		SO1427	0.16	+2.0
1,488,365	+		SO1427	0.16	-0.3
1,488,365	+		SO1427	0.16	-0.7
1,488,419	-		SO1427	0.22	-0.1
1,488,432	-		SO1427	0.23	+0.4
1,488,434	+		SO1427	0.24	+0.7
1,488,434	+		SO1427	0.24	+0.5
1,488,434	+		SO1427	0.24	+0.3
1,488,434	+		SO1427	0.24	-1.4
1,488,437	+		SO1427	0.24	+1.1
1,488,442	-		SO1427	0.24	-0.4
1,488,442	-		SO1427	0.24	+0.9
1,488,483	-		SO1427	0.29	-0.6
1,488,492	+		SO1427	0.30	+0.2
1,488,492	+		SO1427	0.30	+0.7
1,488,492	+		SO1427	0.30	+0.9
1,488,492	+		SO1427	0.30	-1.8
1,488,492	+		SO1427	0.30	+0.6
1,488,492	+		SO1427	0.30	-0.6
1,488,492	+		SO1427	0.30	-0.7
1,488,492	+		SO1427	0.30	-0.4
1,488,492	+		SO1427	0.30	-0.1
1,488,492	+		SO1427	0.30	+1.0
1,488,492	+		SO1427	0.30	+1.2
1,488,492	+		SO1427	0.30	-1.2
1,488,492	+		SO1427	0.30	+0.2
1,488,492	+		SO1427	0.30	-0.5
1,488,492	+		SO1427	0.30	+0.6
1,488,500	-				+1.2
1,488,500	-		SO1427	0.30	-0.0
1,488,500	-		SO1427	0.30	+0.7
1,488,500	-		SO1427	0.30	+0.3
1,488,500	-		SO1427	0.30	+0.3
1,488,500	-		SO1427	0.30	+0.1
1,488,500	-		SO1427	0.30	+1.0
1,488,500	-		SO1427	0.30	-1.4
1,488,500	-		SO1427	0.30	+1.5
1,488,500	-		SO1427	0.30	-0.1
1,488,500	-		SO1427	0.30	-1.4
1,488,500	-		SO1427	0.30	+0.4
1,488,500	-		SO1427	0.30	-4.6
1,488,500	-		SO1427	0.30	+0.5
1,488,500	-		SO1427	0.30	+0.2
1,488,500	-		SO1427	0.30	+0.2
1,488,500	-		SO1427	0.30	-1.8
1,488,500	-		SO1427	0.30	+0.0
1,488,500	-		SO1427	0.30	+0.1
1,488,500	-		SO1427	0.30	+1.2
1,488,500	-		SO1427	0.30	+2.3
1,488,500	-		SO1427	0.30	-0.5
1,488,500	-		SO1427	0.30	+1.0
1,488,500	-		SO1427	0.30	-2.4
1,488,500	-		SO1427	0.30	+0.4
1,488,500	-		SO1427	0.30	-0.1
1,488,500	-		SO1427	0.30	+1.2
1,488,500	-		SO1427	0.30	+1.4
1,488,500	-		SO1427	0.30	-2.6
1,488,500	-		SO1427	0.30	-0.9
1,488,500	-		SO1427	0.30	+1.0
1,488,500	-		SO1427	0.30	+0.1
1,488,500	-		SO1427	0.30	+0.5
1,488,500	-		SO1427	0.30	+1.3
1,488,500	-		SO1427	0.30	+2.7
1,488,500	-		SO1427	0.30	+1.0
1,488,501	+		SO1427	0.31	+0.7
1,488,509	-		SO1427	0.31	+0.2
1,488,510	-		SO1427	0.31	+0.1
1,488,511	+		SO1427	0.32	+0.4
1,488,511	+		SO1427	0.32	+0.8
1,488,511	+		SO1427	0.32	-0.2
1,488,514	+		SO1427	0.32	+0.6
1,488,519	-		SO1427	0.32	+0.6
1,488,522	-		SO1427	0.33	+0.4
1,488,530	+		SO1427	0.34	+1.8
1,488,532	-		SO1427	0.34	+1.3
1,488,548	+		SO1427	0.35	-0.7
1,488,551	-		SO1427	0.36	+0.0
1,488,556	-		SO1427	0.36	-0.0
1,488,556	-		SO1427	0.36	-3.7
1,488,556	-		SO1427	0.36	+0.5
1,488,556	-		SO1427	0.36	+0.1
1,488,556	-		SO1427	0.36	-0.6
1,488,558	+		SO1427	0.36	+0.6
1,488,558	+		SO1427	0.36	+0.4
1,488,567	-		SO1427	0.37	-0.1
1,488,570	-		SO1427	0.38	-2.4
1,488,629	+		SO1427	0.44	+1.3
1,488,631	-		SO1427	0.44	-0.2
1,488,636	+		SO1427	0.45	+1.8
1,488,679	+		SO1427	0.49	+0.7
1,488,713	-		SO1427	0.53	-0.5
1,488,727	+		SO1427	0.54	+0.6
1,488,727	+		SO1427	0.54	-0.4
1,488,727	+		SO1427	0.54	-0.9
1,488,800	+		SO1427	0.62	+1.2
1,488,808	-		SO1427	0.63	+0.6
1,488,834	-		SO1427	0.65	-0.1
1,488,841	-		SO1427	0.66	+0.9
1,488,909	+		SO1427	0.73	+0.3
1,488,924	+		SO1427	0.75	+1.0
1,488,973	-		SO1427	0.80	-2.4
1,489,091	+				+1.3
1,489,091	+				-0.9
1,489,091	+				-1.3
1,489,091	+				-0.3
1,489,099	-				-0.1
1,489,099	-				+1.9
1,489,099	-				+2.2
1,489,136	-				-0.1
1,489,270	-				+0.6
1,489,270	-				+0.1
1,489,277	+				+0.3
1,489,277	+				+1.1
1,489,277	+				-0.4
1,489,285	-				+1.5
1,489,323	-				+1.9
1,489,326	+				-0.2
1,489,334	-				-2.9
1,489,349	+				+0.4
1,489,357	-				-1.5
1,489,505	+		SO1428	0.16	+0.1
1,489,526	+		SO1428	0.17	-1.2
1,489,605	+		SO1428	0.21	-0.2
1,489,784	+		SO1428	0.30	-2.5
1,489,866	+		SO1428	0.34	-2.5
1,489,874	-		SO1428	0.35	-1.5
1,489,991	-		SO1428	0.41	-0.7
1,490,026	+		SO1428	0.43	-2.1
1,490,094	+		SO1428	0.46	-0.4
1,490,138	+		SO1428	0.48	-1.4
1,490,254	+		SO1428	0.54	-0.3
1,490,340	+		SO1428	0.58	-0.8
1,490,358	+		SO1428	0.59	-2.0
1,490,366	-		SO1428	0.60	+0.8
1,490,406	+		SO1428	0.62	-3.4
1,490,470	+		SO1428	0.65	-0.8
1,490,471	+		SO1428	0.65	-0.9
1,490,476	+		SO1428	0.65	-0.5
1,490,484	-		SO1428	0.66	+0.9
1,490,608	-		SO1428	0.72	-0.0
1,490,844	-		SO1428	0.84	+0.4
1,490,867	+		SO1428	0.85	-0.4
1,490,932	-		SO1428	0.88	-1.1
1,490,958	-		SO1428	0.89	-1.6
1,490,968	-		SO1428	0.90	+0.8
1,490,972	+				-0.8
1,490,980	-				-2.4
1,490,982	-				+0.2
1,490,996	+				-1.2
1,491,201	-				+0.4
1,491,221	+				+0.4
1,491,221	+				+0.4
1,491,221	+				+0.6
1,491,221	+				+1.2
1,491,221	+				+0.2
1,491,229	-				+1.3
1,491,229	-				-0.7
1,491,229	-				+0.5
1,491,229	-				+0.7
1,491,229	-				+0.8
1,491,229	-				+1.1
1,491,229	-				-3.8
1,491,446	+	dmaA-1	SO1429	0.10	-0.8
1,491,447	-	dmaA-1	SO1429	0.10	+1.4
1,491,469	+	dmaA-1	SO1429	0.11	+0.4
1,491,504	+	dmaA-1	SO1429	0.13	+1.1
1,491,504	+	dmaA-1	SO1429	0.13	-0.7
1,491,506	+	dmaA-1	SO1429	0.13	+0.5
1,491,506	+	dmaA-1	SO1429	0.13	-0.0
1,491,506	+	dmaA-1	SO1429	0.13	+1.6
1,491,506	+	dmaA-1	SO1429	0.13	+1.1
1,491,506	+	dmaA-1	SO1429	0.13	+0.3
1,491,506	+	dmaA-1	SO1429	0.13	+0.1
1,491,506	+	dmaA-1	SO1429	0.13	+0.0
1,491,514	-	dmaA-1	SO1429	0.13	+0.1
1,491,514	-	dmaA-1	SO1429	0.13	-0.2
1,491,514	-	dmaA-1	SO1429	0.13	+0.1
1,491,514	-	dmaA-1	SO1429	0.13	+0.7
1,491,514	-	dmaA-1	SO1429	0.13	-0.6
1,491,514	-	dmaA-1	SO1429	0.13	+1.0
1,491,514	-	dmaA-1	SO1429	0.13	-1.0
1,491,514	-	dmaA-1	SO1429	0.13	-0.4
1,491,514	-	dmaA-1	SO1429	0.13	+1.5
1,491,514	-	dmaA-1	SO1429	0.13	-1.4
1,491,645	-	dmaA-1	SO1429	0.18	+0.5
1,491,645	-	dmaA-1	SO1429	0.18	+1.2
1,491,740	-	dmaA-1	SO1429	0.22	+1.2
1,491,836	+	dmaA-1	SO1429	0.26	-0.6
1,491,872	+	dmaA-1	SO1429	0.27	+0.7
1,491,940	+	dmaA-1	SO1429	0.30	-0.8
1,491,940	+	dmaA-1	SO1429	0.30	-0.0
1,491,979	-	dmaA-1	SO1429	0.32	+0.7
1,492,051	+	dmaA-1	SO1429	0.34	+1.2
1,492,051	+	dmaA-1	SO1429	0.34	+0.8