Experiment: fumarate electron acceptor
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt SO0649 and SO0650 are separated by 102 nucleotides SO0650 and SO0651 overlap by 1 nucleotides SO0651 and SO0652 overlap by 8 nucleotides SO0652 and SO0653 are separated by 65 nucleotides SO0653 and SO0654 are separated by 35 nucleotides
SO0649: SO0649 - hypothetical protein (NCBI ptt file), at 675,374 to 675,646
SO0649
SO0650: SO0650 - hypothetical protein (NCBI ptt file), at 675,749 to 675,979
SO0650
SO0651: SO0651 - conserved hypothetical protein (NCBI ptt file), at 675,979 to 676,584
SO0651
SO0652: SO0652 - prophage MuSo1, positive regulator of late transcription, putative (NCBI ptt file), at 676,577 to 677,032
SO0652
SO0653: SO0653 - hypothetical protein (NCBI ptt file), at 677,098 to 677,898
SO0653
SO0654: SO0654 - hypothetical protein (NCBI ptt file), at 677,934 to 678,491
SO0654
Position (kb) 676
677
678 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2
3 at 675.658 kb on - strand at 675.683 kb on + strand at 675.691 kb on - strand at 675.701 kb on + strand at 675.739 kb on - strand at 675.739 kb on - strand at 675.818 kb on + strand, within SO0650 at 675.818 kb on + strand, within SO0650 at 675.818 kb on + strand, within SO0650 at 675.818 kb on + strand, within SO0650 at 675.826 kb on - strand, within SO0650 at 675.826 kb on - strand, within SO0650 at 675.905 kb on + strand, within SO0650 at 675.916 kb on + strand, within SO0650 at 675.916 kb on + strand, within SO0650 at 675.916 kb on + strand, within SO0650 at 675.924 kb on - strand, within SO0650 at 676.016 kb on + strand at 676.023 kb on - strand at 676.024 kb on - strand at 676.087 kb on - strand, within SO0651 at 676.276 kb on + strand, within SO0651 at 676.276 kb on + strand, within SO0651 at 676.284 kb on - strand, within SO0651 at 676.284 kb on - strand, within SO0651 at 676.291 kb on + strand, within SO0651 at 676.298 kb on + strand, within SO0651 at 676.311 kb on + strand, within SO0651 at 676.319 kb on - strand, within SO0651 at 676.334 kb on + strand, within SO0651 at 676.354 kb on + strand, within SO0651 at 676.368 kb on + strand, within SO0651 at 676.419 kb on + strand, within SO0651 at 676.443 kb on - strand, within SO0651 at 676.550 kb on + strand at 676.550 kb on + strand at 676.558 kb on - strand at 676.558 kb on - strand at 676.560 kb on + strand at 676.560 kb on + strand at 676.568 kb on - strand at 676.568 kb on - strand at 676.568 kb on - strand at 676.568 kb on - strand at 676.641 kb on - strand, within SO0652 at 676.671 kb on - strand, within SO0652 at 676.694 kb on - strand, within SO0652 at 676.745 kb on + strand, within SO0652 at 676.761 kb on + strand, within SO0652 at 676.761 kb on + strand, within SO0652 at 676.769 kb on - strand, within SO0652 at 676.795 kb on + strand, within SO0652 at 676.800 kb on + strand, within SO0652 at 676.830 kb on + strand, within SO0652 at 676.832 kb on - strand, within SO0652 at 676.849 kb on + strand, within SO0652 at 676.855 kb on + strand, within SO0652 at 676.862 kb on + strand, within SO0652 at 676.862 kb on + strand, within SO0652 at 676.870 kb on + strand, within SO0652 at 676.870 kb on + strand, within SO0652 at 676.870 kb on + strand, within SO0652 at 676.875 kb on + strand, within SO0652 at 676.878 kb on - strand, within SO0652 at 676.909 kb on + strand, within SO0652 at 676.916 kb on - strand, within SO0652 at 676.918 kb on + strand, within SO0652 at 676.931 kb on - strand, within SO0652 at 676.944 kb on + strand, within SO0652 at 676.944 kb on + strand, within SO0652 at 676.950 kb on + strand, within SO0652 at 676.950 kb on + strand, within SO0652 at 676.950 kb on + strand, within SO0652 at 676.950 kb on + strand, within SO0652 at 676.950 kb on + strand, within SO0652 at 676.950 kb on + strand, within SO0652 at 676.952 kb on - strand, within SO0652 at 676.952 kb on - strand, within SO0652 at 676.952 kb on - strand, within SO0652 at 676.952 kb on - strand, within SO0652 at 676.958 kb on - strand, within SO0652 at 676.958 kb on - strand, within SO0652 at 676.975 kb on + strand, within SO0652 at 676.979 kb on - strand, within SO0652 at 676.985 kb on + strand, within SO0652 at 676.987 kb on + strand at 676.987 kb on + strand at 676.993 kb on - strand at 676.995 kb on - strand at 677.020 kb on - strand at 677.026 kb on + strand at 677.026 kb on + strand at 677.034 kb on - strand at 677.034 kb on - strand at 677.042 kb on + strand at 677.044 kb on + strand at 677.050 kb on - strand at 677.050 kb on - strand at 677.131 kb on - strand at 677.196 kb on + strand, within SO0653 at 677.202 kb on + strand, within SO0653 at 677.203 kb on + strand, within SO0653 at 677.203 kb on + strand, within SO0653 at 677.203 kb on + strand, within SO0653 at 677.203 kb on + strand, within SO0653 at 677.203 kb on + strand, within SO0653 at 677.203 kb on + strand, within SO0653 at 677.203 kb on + strand, within SO0653 at 677.203 kb on + strand, within SO0653 at 677.203 kb on + strand, within SO0653 at 677.203 kb on + strand, within SO0653 at 677.203 kb on + strand, within SO0653 at 677.203 kb on + strand, within SO0653 at 677.203 kb on + strand, within SO0653 at 677.210 kb on - strand, within SO0653 at 677.210 kb on - strand, within SO0653 at 677.210 kb on - strand, within SO0653 at 677.211 kb on - strand, within SO0653 at 677.211 kb on - strand, within SO0653 at 677.211 kb on - strand, within SO0653 at 677.211 kb on - strand, within SO0653 at 677.211 kb on - strand, within SO0653 at 677.211 kb on - strand, within SO0653 at 677.211 kb on - strand, within SO0653 at 677.211 kb on - strand, within SO0653 at 677.211 kb on - strand, within SO0653 at 677.211 kb on - strand, within SO0653 at 677.211 kb on - strand, within SO0653 at 677.211 kb on - strand, within SO0653 at 677.222 kb on + strand, within SO0653 at 677.228 kb on - strand, within SO0653 at 677.292 kb on + strand, within SO0653 at 677.297 kb on + strand, within SO0653 at 677.300 kb on - strand, within SO0653 at 677.305 kb on - strand, within SO0653 at 677.310 kb on + strand, within SO0653 at 677.310 kb on + strand, within SO0653 at 677.313 kb on - strand, within SO0653 at 677.315 kb on - strand, within SO0653 at 677.318 kb on - strand, within SO0653 at 677.318 kb on - strand, within SO0653 at 677.339 kb on - strand, within SO0653 at 677.419 kb on - strand, within SO0653 at 677.429 kb on - strand, within SO0653 at 677.429 kb on - strand, within SO0653 at 677.429 kb on - strand, within SO0653 at 677.429 kb on - strand, within SO0653 at 677.436 kb on + strand, within SO0653 at 677.444 kb on - strand, within SO0653 at 677.457 kb on + strand, within SO0653 at 677.484 kb on + strand, within SO0653 at 677.486 kb on + strand, within SO0653 at 677.486 kb on + strand, within SO0653 at 677.507 kb on + strand, within SO0653 at 677.510 kb on - strand, within SO0653 at 677.511 kb on - strand, within SO0653 at 677.514 kb on + strand, within SO0653 at 677.515 kb on - strand, within SO0653 at 677.525 kb on - strand, within SO0653 at 677.529 kb on + strand, within SO0653 at 677.529 kb on + strand, within SO0653 at 677.529 kb on + strand, within SO0653 at 677.529 kb on + strand, within SO0653 at 677.537 kb on - strand, within SO0653 at 677.540 kb on + strand, within SO0653 at 677.558 kb on + strand, within SO0653 at 677.558 kb on + strand, within SO0653 at 677.558 kb on + strand, within SO0653 at 677.558 kb on + strand, within SO0653 at 677.563 kb on + strand, within SO0653 at 677.566 kb on + strand, within SO0653 at 677.566 kb on + strand, within SO0653 at 677.566 kb on - strand, within SO0653 at 677.566 kb on - strand, within SO0653 at 677.566 kb on - strand, within SO0653 at 677.569 kb on - strand, within SO0653 at 677.573 kb on + strand, within SO0653 at 677.573 kb on + strand, within SO0653 at 677.573 kb on + strand, within SO0653 at 677.573 kb on + strand, within SO0653 at 677.573 kb on + strand, within SO0653 at 677.573 kb on + strand, within SO0653 at 677.573 kb on + strand, within SO0653 at 677.573 kb on + strand, within SO0653 at 677.573 kb on + strand, within SO0653 at 677.573 kb on + strand, within SO0653 at 677.573 kb on + strand, within SO0653 at 677.573 kb on + strand, within SO0653 at 677.574 kb on - strand, within SO0653 at 677.581 kb on - strand, within SO0653 at 677.581 kb on - strand, within SO0653 at 677.581 kb on - strand, within SO0653 at 677.581 kb on - strand, within SO0653 at 677.581 kb on - strand, within SO0653 at 677.581 kb on - strand, within SO0653 at 677.581 kb on - strand, within SO0653 at 677.581 kb on - strand, within SO0653 at 677.581 kb on - strand, within SO0653 at 677.582 kb on - strand, within SO0653 at 677.589 kb on - strand, within SO0653 at 677.614 kb on - strand, within SO0653 at 677.615 kb on - strand, within SO0653 at 677.652 kb on + strand, within SO0653 at 677.755 kb on - strand, within SO0653 at 677.766 kb on - strand, within SO0653 at 677.794 kb on + strand, within SO0653 at 677.817 kb on + strand, within SO0653 at 677.823 kb on - strand at 677.831 kb on - strand at 677.842 kb on - strand at 677.850 kb on - strand at 677.861 kb on - strand at 677.862 kb on + strand at 677.862 kb on + strand at 677.862 kb on + strand at 677.870 kb on - strand at 677.870 kb on - strand at 677.870 kb on - strand at 677.870 kb on - strand at 677.870 kb on - strand at 677.872 kb on + strand at 677.872 kb on + strand at 677.872 kb on + strand at 677.872 kb on + strand at 677.872 kb on + strand at 677.872 kb on + strand at 677.872 kb on + strand at 677.872 kb on + strand at 677.872 kb on + strand at 677.872 kb on + strand at 677.872 kb on + strand at 677.872 kb on + strand at 677.872 kb on + strand at 677.872 kb on + strand at 677.875 kb on - strand at 677.880 kb on - strand at 677.880 kb on - strand at 677.880 kb on - strand at 677.880 kb on - strand at 677.880 kb on - strand at 677.880 kb on - strand at 677.880 kb on - strand at 677.880 kb on - strand at 677.880 kb on - strand at 677.880 kb on - strand at 677.880 kb on - strand at 677.880 kb on - strand at 677.967 kb on + strand at 677.973 kb on + strand at 677.973 kb on + strand at 677.974 kb on + strand at 677.974 kb on + strand at 677.974 kb on + strand at 677.974 kb on + strand at 677.975 kb on - strand at 677.979 kb on + strand at 677.981 kb on + strand at 677.982 kb on - strand at 677.989 kb on + strand at 677.989 kb on - strand at 678.003 kb on - strand, within SO0654 at 678.016 kb on - strand, within SO0654 at 678.016 kb on - strand, within SO0654
Per-strain Table
Position Strand Gene LocusTag Fraction fumarate electron acceptor remove 675,658 - -3.2 675,683 + +1.8 675,691 - -0.7 675,701 + +0.3 675,739 - +0.9 675,739 - -1.5 675,818 + SO0650 0.30 -0.1 675,818 + SO0650 0.30 +0.4 675,818 + SO0650 0.30 +0.2 675,818 + SO0650 0.30 -1.3 675,826 - SO0650 0.33 +0.9 675,826 - SO0650 0.33 -0.6 675,905 + SO0650 0.68 +0.2 675,916 + SO0650 0.72 +0.6 675,916 + SO0650 0.72 -1.0 675,916 + SO0650 0.72 +0.1 675,924 - SO0650 0.76 -1.2 676,016 + -2.0 676,023 - -0.9 676,024 - -1.8 676,087 - SO0651 0.18 +3.2 676,276 + SO0651 0.49 +0.6 676,276 + SO0651 0.49 -2.0 676,284 - SO0651 0.50 +0.4 676,284 - SO0651 0.50 +0.5 676,291 + SO0651 0.51 -1.7 676,298 + SO0651 0.53 -1.6 676,311 + SO0651 0.55 +0.9 676,319 - SO0651 0.56 +0.1 676,334 + SO0651 0.59 +0.8 676,354 + SO0651 0.62 +0.3 676,368 + SO0651 0.64 -0.3 676,419 + SO0651 0.73 +0.3 676,443 - SO0651 0.77 +0.3 676,550 + -3.2 676,550 + +0.6 676,558 - +0.5 676,558 - +0.8 676,560 + -1.9 676,560 + -0.9 676,568 - +1.7 676,568 - +0.5 676,568 - -0.1 676,568 - +0.7 676,641 - SO0652 0.14 -0.8 676,671 - SO0652 0.21 +1.3 676,694 - SO0652 0.26 -1.8 676,745 + SO0652 0.37 -1.4 676,761 + SO0652 0.40 +0.6 676,761 + SO0652 0.40 -0.6 676,769 - SO0652 0.42 +0.9 676,795 + SO0652 0.48 -0.1 676,800 + SO0652 0.49 -0.5 676,830 + SO0652 0.55 -2.8 676,832 - SO0652 0.56 +1.5 676,849 + SO0652 0.60 -0.9 676,855 + SO0652 0.61 -0.2 676,862 + SO0652 0.62 -2.3 676,862 + SO0652 0.62 -0.1 676,870 + SO0652 0.64 -0.6 676,870 + SO0652 0.64 -2.4 676,870 + SO0652 0.64 +1.0 676,875 + SO0652 0.65 -2.9 676,878 - SO0652 0.66 -0.0 676,909 + SO0652 0.73 +1.4 676,916 - SO0652 0.74 +0.6 676,918 + SO0652 0.75 -1.1 676,931 - SO0652 0.78 -2.5 676,944 + SO0652 0.80 +0.8 676,944 + SO0652 0.80 +0.3 676,950 + SO0652 0.82 +0.4 676,950 + SO0652 0.82 -2.5 676,950 + SO0652 0.82 +0.8 676,950 + SO0652 0.82 -3.1 676,950 + SO0652 0.82 -2.2 676,950 + SO0652 0.82 -0.7 676,952 - SO0652 0.82 -0.4 676,952 - SO0652 0.82 -2.0 676,952 - SO0652 0.82 +0.2 676,952 - SO0652 0.82 -2.6 676,958 - SO0652 0.84 +0.4 676,958 - SO0652 0.84 -4.5 676,975 + SO0652 0.87 +0.7 676,979 - SO0652 0.88 -3.1 676,985 + SO0652 0.89 -0.3 676,987 + +2.0 676,987 + -0.7 676,993 - +0.7 676,995 - +1.2 677,020 - +2.1 677,026 + +0.6 677,026 + -4.6 677,034 - -1.0 677,034 - -1.1 677,042 + -0.0 677,044 + +1.2 677,050 - -0.9 677,050 - -1.5 677,131 - +0.3 677,196 + SO0653 0.12 -0.9 677,202 + SO0653 0.13 -1.9 677,203 + SO0653 0.13 -0.3 677,203 + SO0653 0.13 +1.3 677,203 + SO0653 0.13 +2.1 677,203 + SO0653 0.13 +1.5 677,203 + SO0653 0.13 -1.7 677,203 + SO0653 0.13 -2.6 677,203 + SO0653 0.13 +1.1 677,203 + SO0653 0.13 -1.2 677,203 + SO0653 0.13 -3.8 677,203 + SO0653 0.13 +1.0 677,203 + SO0653 0.13 +0.6 677,203 + SO0653 0.13 -3.1 677,203 + SO0653 0.13 -0.5 677,210 - SO0653 0.14 +0.6 677,210 - SO0653 0.14 +1.2 677,210 - SO0653 0.14 -3.7 677,211 - SO0653 0.14 +0.6 677,211 - SO0653 0.14 -0.4 677,211 - SO0653 0.14 +1.0 677,211 - SO0653 0.14 -0.1 677,211 - SO0653 0.14 -0.7 677,211 - SO0653 0.14 +1.5 677,211 - SO0653 0.14 +1.4 677,211 - SO0653 0.14 +1.5 677,211 - SO0653 0.14 +0.7 677,211 - SO0653 0.14 -0.7 677,211 - SO0653 0.14 +0.7 677,211 - SO0653 0.14 -0.0 677,222 + SO0653 0.15 -1.0 677,228 - SO0653 0.16 -1.3 677,292 + SO0653 0.24 +0.7 677,297 + SO0653 0.25 +0.8 677,300 - SO0653 0.25 +0.2 677,305 - SO0653 0.26 +3.2 677,310 + SO0653 0.26 +0.2 677,310 + SO0653 0.26 +0.7 677,313 - SO0653 0.27 +1.8 677,315 - SO0653 0.27 +0.5 677,318 - SO0653 0.27 +0.5 677,318 - SO0653 0.27 +2.3 677,339 - SO0653 0.30 +0.6 677,419 - SO0653 0.40 -1.6 677,429 - SO0653 0.41 +2.1 677,429 - SO0653 0.41 -0.3 677,429 - SO0653 0.41 -0.0 677,429 - SO0653 0.41 -1.9 677,436 + SO0653 0.42 +0.7 677,444 - SO0653 0.43 -1.1 677,457 + SO0653 0.45 +0.8 677,484 + SO0653 0.48 -1.6 677,486 + SO0653 0.48 +1.2 677,486 + SO0653 0.48 -0.7 677,507 + SO0653 0.51 -2.5 677,510 - SO0653 0.51 -3.1 677,511 - SO0653 0.52 +0.4 677,514 + SO0653 0.52 +0.5 677,515 - SO0653 0.52 +1.9 677,525 - SO0653 0.53 -1.5 677,529 + SO0653 0.54 +1.1 677,529 + SO0653 0.54 +1.1 677,529 + SO0653 0.54 -0.3 677,529 + SO0653 0.54 -2.6 677,537 - SO0653 0.55 -1.5 677,540 + SO0653 0.55 +0.5 677,558 + SO0653 0.57 +0.4 677,558 + SO0653 0.57 -0.2 677,558 + SO0653 0.57 +0.5 677,558 + SO0653 0.57 -0.4 677,563 + SO0653 0.58 -0.2 677,566 + SO0653 0.58 +0.1 677,566 + SO0653 0.58 -1.4 677,566 - SO0653 0.58 +0.5 677,566 - SO0653 0.58 +0.0 677,566 - SO0653 0.58 +0.7 677,569 - SO0653 0.59 +0.7 677,573 + SO0653 0.59 +1.2 677,573 + SO0653 0.59 +1.3 677,573 + SO0653 0.59 +2.0 677,573 + SO0653 0.59 -0.3 677,573 + SO0653 0.59 -1.8 677,573 + SO0653 0.59 +1.4 677,573 + SO0653 0.59 -0.2 677,573 + SO0653 0.59 -0.2 677,573 + SO0653 0.59 -0.8 677,573 + SO0653 0.59 -1.2 677,573 + SO0653 0.59 +0.3 677,573 + SO0653 0.59 -0.9 677,574 - SO0653 0.59 +1.1 677,581 - SO0653 0.60 +0.9 677,581 - SO0653 0.60 -0.1 677,581 - SO0653 0.60 +1.0 677,581 - SO0653 0.60 -0.7 677,581 - SO0653 0.60 -0.6 677,581 - SO0653 0.60 +1.2 677,581 - SO0653 0.60 -0.5 677,581 - SO0653 0.60 -2.7 677,581 - SO0653 0.60 +1.0 677,582 - SO0653 0.60 +0.5 677,589 - SO0653 0.61 +0.5 677,614 - SO0653 0.64 -0.7 677,615 - SO0653 0.65 +0.0 677,652 + SO0653 0.69 +0.4 677,755 - SO0653 0.82 -0.6 677,766 - SO0653 0.83 +0.6 677,794 + SO0653 0.87 -0.3 677,817 + SO0653 0.90 +0.7 677,823 - -2.5 677,831 - +0.2 677,842 - +0.5 677,850 - +0.6 677,861 - -0.2 677,862 + -0.4 677,862 + -0.6 677,862 + -0.8 677,870 - +1.3 677,870 - -2.2 677,870 - -0.7 677,870 - -0.1 677,870 - +0.7 677,872 + +0.6 677,872 + +1.1 677,872 + +1.1 677,872 + +1.0 677,872 + -2.1 677,872 + +0.7 677,872 + -0.0 677,872 + +1.0 677,872 + +0.3 677,872 + -0.4 677,872 + -2.3 677,872 + +0.3 677,872 + +1.0 677,872 + +0.2 677,875 - +1.6 677,880 - -0.7 677,880 - +1.3 677,880 - -0.6 677,880 - +1.1 677,880 - +1.8 677,880 - -0.3 677,880 - -0.1 677,880 - +0.3 677,880 - -1.9 677,880 - -1.1 677,880 - -2.1 677,880 - -0.9 677,967 + -0.1 677,973 + -0.5 677,973 + +0.8 677,974 + -2.5 677,974 + -0.5 677,974 + +0.6 677,974 + +1.8 677,975 - -0.2 677,979 + +1.0 677,981 + -0.6 677,982 - +1.1 677,989 + -0.3 677,989 - -0.1 678,003 - SO0654 0.12 +0.4 678,016 - SO0654 0.15 -1.6 678,016 - SO0654 0.15 -1.9
Or see this region's nucleotide sequence