Experiment: fumarate electron acceptor
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt SO0451 and trxC overlap by 18 nucleotides trxC and fkbP-1 are separated by 174 nucleotides fkbP-1 and SO0454 overlap by 4 nucleotides SO0454 and SO0455 are separated by 42 nucleotides
SO0451: SO0451 - hypothetical protein (NCBI ptt file), at 478,775 to 478,927
SO0451
SO0452: trxC - thioredoxin 2 (NCBI ptt file), at 478,910 to 479,332
trxC
SO0453: fkbP-1 - peptidyl-prolyl cis-trans isomerase FkbP (NCBI ptt file), at 479,507 to 479,842
fkbP-1
SO0454: SO0454 - conserved hypothetical protein (NCBI ptt file), at 479,839 to 480,261
SO0454
SO0455: SO0455 - hypothetical transporter (NCBI ptt file), at 480,304 to 482,337
SO0455
Position (kb) 479
480
481 Strain fitness (log2 ratio) -2
-1
0
1
2
3 at 478.931 kb on + strand at 478.939 kb on - strand at 478.947 kb on - strand at 478.949 kb on + strand at 479.063 kb on - strand, within trxC at 479.182 kb on - strand, within trxC at 479.296 kb on + strand at 479.304 kb on + strand at 479.396 kb on + strand at 479.415 kb on - strand at 479.462 kb on - strand at 479.569 kb on + strand, within fkbP-1 at 479.610 kb on - strand, within fkbP-1 at 479.614 kb on + strand, within fkbP-1 at 479.622 kb on - strand, within fkbP-1 at 479.668 kb on - strand, within fkbP-1 at 479.687 kb on + strand, within fkbP-1 at 479.729 kb on + strand, within fkbP-1 at 479.744 kb on + strand, within fkbP-1 at 479.744 kb on + strand, within fkbP-1 at 479.749 kb on + strand, within fkbP-1 at 479.883 kb on - strand, within SO0454 at 479.888 kb on + strand, within SO0454 at 479.921 kb on - strand, within SO0454 at 479.931 kb on + strand, within SO0454 at 479.941 kb on - strand, within SO0454 at 479.981 kb on - strand, within SO0454 at 480.011 kb on + strand, within SO0454 at 480.120 kb on - strand, within SO0454 at 480.130 kb on + strand, within SO0454 at 480.130 kb on + strand, within SO0454 at 480.130 kb on + strand, within SO0454 at 480.130 kb on + strand, within SO0454 at 480.137 kb on + strand, within SO0454 at 480.226 kb on + strand at 480.309 kb on - strand at 480.347 kb on - strand at 480.364 kb on + strand at 480.367 kb on - strand at 480.372 kb on - strand at 480.518 kb on + strand, within SO0455 at 480.526 kb on - strand, within SO0455 at 480.810 kb on + strand, within SO0455 at 480.871 kb on + strand, within SO0455 at 480.903 kb on + strand, within SO0455 at 480.911 kb on - strand, within SO0455 at 480.968 kb on - strand, within SO0455 at 481.015 kb on - strand, within SO0455 at 481.148 kb on - strand, within SO0455 at 481.227 kb on + strand, within SO0455 at 481.235 kb on - strand, within SO0455 at 481.244 kb on + strand, within SO0455 at 481.252 kb on - strand, within SO0455
Per-strain Table
Position Strand Gene LocusTag Fraction fumarate electron acceptor remove 478,931 + -0.8 478,939 - -0.1 478,947 - +0.6 478,949 + -0.8 479,063 - trxC SO0452 0.36 +0.0 479,182 - trxC SO0452 0.64 -2.7 479,296 + +0.9 479,304 + -0.1 479,396 + -1.2 479,415 - +0.5 479,462 - +0.9 479,569 + fkbP-1 SO0453 0.18 +0.5 479,610 - fkbP-1 SO0453 0.31 -0.8 479,614 + fkbP-1 SO0453 0.32 +2.1 479,622 - fkbP-1 SO0453 0.34 +0.1 479,668 - fkbP-1 SO0453 0.48 +0.4 479,687 + fkbP-1 SO0453 0.54 +0.9 479,729 + fkbP-1 SO0453 0.66 +1.1 479,744 + fkbP-1 SO0453 0.71 +0.7 479,744 + fkbP-1 SO0453 0.71 +0.5 479,749 + fkbP-1 SO0453 0.72 +0.7 479,883 - SO0454 0.10 -0.4 479,888 + SO0454 0.12 +2.3 479,921 - SO0454 0.19 +1.3 479,931 + SO0454 0.22 +1.5 479,941 - SO0454 0.24 +1.0 479,981 - SO0454 0.34 +0.3 480,011 + SO0454 0.41 +0.7 480,120 - SO0454 0.66 +0.9 480,130 + SO0454 0.69 +2.8 480,130 + SO0454 0.69 +0.9 480,130 + SO0454 0.69 +0.3 480,130 + SO0454 0.69 +0.5 480,137 + SO0454 0.70 -0.0 480,226 + +2.8 480,309 - +0.3 480,347 - +0.1 480,364 + +0.8 480,367 - +1.0 480,372 - +0.2 480,518 + SO0455 0.11 +0.0 480,526 - SO0455 0.11 -1.1 480,810 + SO0455 0.25 -0.2 480,871 + SO0455 0.28 +0.3 480,903 + SO0455 0.29 -1.9 480,911 - SO0455 0.30 -0.3 480,968 - SO0455 0.33 +0.4 481,015 - SO0455 0.35 +0.7 481,148 - SO0455 0.41 -0.8 481,227 + SO0455 0.45 +0.5 481,235 - SO0455 0.46 +2.3 481,244 + SO0455 0.46 +1.5 481,252 - SO0455 0.47 +0.5
Or see this region's nucleotide sequence