Experiment: fumarate electron acceptor
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt SO0362 and SO0363 are separated by 158 nucleotides SO0363 and SO0364 are separated by 7 nucleotides
SO0362: SO0362 - hypothetical protein (NCBI ptt file), at 371,943 to 373,493
SO0362
SO0363: SO0363 - hypothetical protein (NCBI ptt file), at 373,652 to 374,533
SO0363
SO0364: SO0364 - conserved hypothetical protein (NCBI ptt file), at 374,541 to 375,581
SO0364
Position (kb) 373
374
375 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2
3
4 at 372.662 kb on - strand, within SO0362 at 372.662 kb on - strand, within SO0362 at 372.684 kb on + strand, within SO0362 at 372.725 kb on + strand, within SO0362 at 372.776 kb on + strand, within SO0362 at 373.076 kb on + strand, within SO0362 at 373.149 kb on - strand, within SO0362 at 373.149 kb on - strand, within SO0362 at 373.149 kb on - strand, within SO0362 at 373.177 kb on + strand, within SO0362 at 373.214 kb on + strand, within SO0362 at 373.214 kb on + strand, within SO0362 at 373.235 kb on + strand, within SO0362 at 373.270 kb on + strand, within SO0362 at 373.299 kb on - strand, within SO0362 at 373.429 kb on + strand at 373.437 kb on - strand at 373.487 kb on - strand at 373.525 kb on + strand at 373.525 kb on + strand at 373.728 kb on + strand at 373.728 kb on + strand at 373.728 kb on + strand at 373.728 kb on + strand at 373.728 kb on + strand at 373.728 kb on + strand at 373.736 kb on - strand at 373.736 kb on - strand at 373.736 kb on - strand at 373.736 kb on - strand at 373.737 kb on - strand at 373.830 kb on - strand, within SO0363 at 373.931 kb on + strand, within SO0363 at 373.944 kb on + strand, within SO0363 at 374.089 kb on - strand, within SO0363 at 374.109 kb on - strand, within SO0363 at 374.127 kb on - strand, within SO0363 at 374.137 kb on - strand, within SO0363 at 374.411 kb on + strand, within SO0363 at 374.430 kb on + strand, within SO0363 at 374.430 kb on + strand, within SO0363 at 374.433 kb on - strand, within SO0363 at 374.438 kb on - strand, within SO0363 at 374.467 kb on - strand at 374.630 kb on + strand at 374.665 kb on - strand, within SO0364 at 374.693 kb on + strand, within SO0364 at 374.745 kb on - strand, within SO0364 at 374.770 kb on + strand, within SO0364 at 374.770 kb on + strand, within SO0364 at 374.778 kb on - strand, within SO0364 at 374.799 kb on + strand, within SO0364 at 374.812 kb on - strand, within SO0364 at 375.018 kb on + strand, within SO0364 at 375.026 kb on + strand, within SO0364 at 375.026 kb on + strand, within SO0364 at 375.034 kb on - strand, within SO0364 at 375.237 kb on + strand, within SO0364 at 375.403 kb on + strand, within SO0364 at 375.411 kb on - strand, within SO0364 at 375.524 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction fumarate electron acceptor remove 372,662 - SO0362 0.46 +1.3 372,662 - SO0362 0.46 -0.3 372,684 + SO0362 0.48 +0.6 372,725 + SO0362 0.50 +1.7 372,776 + SO0362 0.54 +0.7 373,076 + SO0362 0.73 +0.1 373,149 - SO0362 0.78 +0.6 373,149 - SO0362 0.78 +0.9 373,149 - SO0362 0.78 -0.7 373,177 + SO0362 0.80 -1.2 373,214 + SO0362 0.82 +2.9 373,214 + SO0362 0.82 -1.8 373,235 + SO0362 0.83 -1.0 373,270 + SO0362 0.86 -1.1 373,299 - SO0362 0.87 -0.5 373,429 + +0.9 373,437 - -0.5 373,487 - +1.6 373,525 + -1.8 373,525 + -0.5 373,728 + -1.0 373,728 + -0.8 373,728 + +0.0 373,728 + -1.3 373,728 + -1.6 373,728 + -1.2 373,736 - -2.5 373,736 - +0.2 373,736 - -0.1 373,736 - +2.2 373,737 - +1.4 373,830 - SO0363 0.20 -2.1 373,931 + SO0363 0.32 -1.8 373,944 + SO0363 0.33 +1.3 374,089 - SO0363 0.50 -2.5 374,109 - SO0363 0.52 +0.5 374,127 - SO0363 0.54 +0.3 374,137 - SO0363 0.55 +3.9 374,411 + SO0363 0.86 +0.2 374,430 + SO0363 0.88 +0.0 374,430 + SO0363 0.88 +0.4 374,433 - SO0363 0.89 -1.2 374,438 - SO0363 0.89 +0.5 374,467 - -0.0 374,630 + -0.6 374,665 - SO0364 0.12 +0.7 374,693 + SO0364 0.15 -0.8 374,745 - SO0364 0.20 -0.1 374,770 + SO0364 0.22 -0.1 374,770 + SO0364 0.22 -2.3 374,778 - SO0364 0.23 -1.1 374,799 + SO0364 0.25 +2.2 374,812 - SO0364 0.26 +1.7 375,018 + SO0364 0.46 -0.5 375,026 + SO0364 0.47 -3.8 375,026 + SO0364 0.47 -0.1 375,034 - SO0364 0.47 +1.3 375,237 + SO0364 0.67 -0.6 375,403 + SO0364 0.83 -0.1 375,411 - SO0364 0.84 -0.2 375,524 + +2.0
Or see this region's nucleotide sequence