Experiment: fumarate electron acceptor
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ftn and SO0140 are separated by 185 nucleotides SO0140 and SO0141 are separated by 76 nucleotides SO0141 and ribB are separated by 363 nucleotides
SO0139: ftn - ferritin (NCBI ptt file), at 145,712 to 146,248
ftn
SO0140: SO0140 - hypothetical protein (NCBI ptt file), at 146,434 to 146,529
SO0140
SO0141: SO0141 - sensory box protein (NCBI ptt file), at 146,606 to 149,839
SO0141
SO0142: ribB - 3,4-dihydroxy-2-butanone 4-phosphate synthase (NCBI ptt file), at 150,203 to 150,856
ribB
Position (kb) 146
147
148
149
150 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2
3 at 145.656 kb on + strand at 145.658 kb on + strand at 145.658 kb on + strand at 145.725 kb on - strand at 145.778 kb on - strand, within ftn at 145.808 kb on + strand, within ftn at 145.816 kb on - strand, within ftn at 145.816 kb on - strand, within ftn at 145.816 kb on - strand, within ftn at 145.921 kb on - strand, within ftn at 145.948 kb on + strand, within ftn at 146.004 kb on - strand, within ftn at 146.019 kb on + strand, within ftn at 146.330 kb on - strand at 146.330 kb on - strand at 146.611 kb on + strand at 146.657 kb on - strand at 146.667 kb on - strand at 146.725 kb on - strand at 146.736 kb on + strand at 146.812 kb on - strand at 146.939 kb on - strand, within SO0141 at 146.986 kb on + strand, within SO0141 at 146.986 kb on + strand, within SO0141 at 146.994 kb on - strand, within SO0141 at 146.994 kb on - strand, within SO0141 at 146.994 kb on - strand, within SO0141 at 146.994 kb on - strand, within SO0141 at 146.994 kb on - strand, within SO0141 at 147.084 kb on - strand, within SO0141 at 147.084 kb on - strand, within SO0141 at 147.156 kb on + strand, within SO0141 at 147.164 kb on - strand, within SO0141 at 147.187 kb on + strand, within SO0141 at 147.187 kb on + strand, within SO0141 at 147.187 kb on + strand, within SO0141 at 147.187 kb on + strand, within SO0141 at 147.187 kb on + strand, within SO0141 at 147.187 kb on + strand, within SO0141 at 147.195 kb on - strand, within SO0141 at 147.195 kb on - strand, within SO0141 at 147.195 kb on - strand, within SO0141 at 147.195 kb on - strand, within SO0141 at 147.195 kb on - strand, within SO0141 at 147.195 kb on - strand, within SO0141 at 147.195 kb on - strand, within SO0141 at 147.195 kb on - strand, within SO0141 at 147.195 kb on - strand, within SO0141 at 147.195 kb on - strand, within SO0141 at 147.195 kb on - strand, within SO0141 at 147.195 kb on - strand, within SO0141 at 147.195 kb on - strand, within SO0141 at 147.195 kb on - strand, within SO0141 at 147.195 kb on - strand, within SO0141 at 147.195 kb on - strand, within SO0141 at 147.269 kb on - strand, within SO0141 at 147.319 kb on + strand, within SO0141 at 147.332 kb on + strand, within SO0141 at 147.378 kb on + strand, within SO0141 at 147.386 kb on - strand, within SO0141 at 147.530 kb on + strand, within SO0141 at 147.535 kb on + strand, within SO0141 at 147.535 kb on + strand, within SO0141 at 147.535 kb on + strand, within SO0141 at 147.612 kb on - strand, within SO0141 at 147.710 kb on - strand, within SO0141 at 147.777 kb on - strand, within SO0141 at 147.780 kb on + strand, within SO0141 at 147.788 kb on - strand, within SO0141 at 148.007 kb on - strand, within SO0141 at 148.024 kb on + strand, within SO0141 at 148.036 kb on + strand, within SO0141 at 148.064 kb on + strand, within SO0141 at 148.064 kb on + strand, within SO0141 at 148.201 kb on + strand, within SO0141 at 148.201 kb on + strand, within SO0141 at 148.201 kb on + strand, within SO0141 at 148.209 kb on - strand, within SO0141 at 148.209 kb on - strand, within SO0141 at 148.231 kb on + strand, within SO0141 at 148.233 kb on - strand, within SO0141 at 148.273 kb on + strand, within SO0141 at 148.281 kb on - strand, within SO0141 at 148.366 kb on + strand, within SO0141 at 148.382 kb on - strand, within SO0141 at 148.384 kb on + strand, within SO0141 at 148.512 kb on - strand, within SO0141 at 148.596 kb on + strand, within SO0141 at 148.596 kb on + strand, within SO0141 at 148.596 kb on + strand, within SO0141 at 148.596 kb on + strand, within SO0141 at 148.604 kb on - strand, within SO0141 at 148.604 kb on - strand, within SO0141 at 148.604 kb on - strand, within SO0141 at 148.604 kb on - strand, within SO0141 at 148.626 kb on + strand, within SO0141 at 148.659 kb on - strand, within SO0141 at 148.691 kb on - strand, within SO0141 at 148.749 kb on - strand, within SO0141 at 148.794 kb on + strand, within SO0141 at 148.794 kb on + strand, within SO0141 at 148.794 kb on + strand, within SO0141 at 148.794 kb on + strand, within SO0141 at 148.802 kb on - strand, within SO0141 at 148.802 kb on - strand, within SO0141 at 148.802 kb on - strand, within SO0141 at 148.831 kb on + strand, within SO0141 at 148.852 kb on + strand, within SO0141 at 148.942 kb on + strand, within SO0141 at 148.942 kb on + strand, within SO0141 at 148.950 kb on - strand, within SO0141 at 148.950 kb on - strand, within SO0141 at 148.952 kb on - strand, within SO0141 at 148.997 kb on + strand, within SO0141 at 149.016 kb on - strand, within SO0141 at 149.081 kb on + strand, within SO0141 at 149.088 kb on + strand, within SO0141 at 149.093 kb on + strand, within SO0141 at 149.200 kb on + strand, within SO0141 at 149.251 kb on + strand, within SO0141 at 149.251 kb on + strand, within SO0141 at 149.251 kb on + strand, within SO0141 at 149.257 kb on - strand, within SO0141 at 149.264 kb on + strand, within SO0141 at 149.272 kb on - strand, within SO0141 at 149.444 kb on + strand, within SO0141 at 149.444 kb on + strand, within SO0141 at 149.460 kb on - strand, within SO0141 at 149.535 kb on + strand at 149.535 kb on + strand at 149.535 kb on + strand at 149.535 kb on + strand at 149.545 kb on - strand at 149.549 kb on + strand at 149.557 kb on - strand at 149.623 kb on + strand at 149.628 kb on + strand at 149.733 kb on + strand at 149.862 kb on - strand at 149.887 kb on + strand at 149.943 kb on + strand at 150.105 kb on - strand at 150.163 kb on - strand at 150.185 kb on - strand at 150.247 kb on + strand at 150.318 kb on + strand, within ribB at 150.410 kb on + strand, within ribB at 150.418 kb on - strand, within ribB at 150.446 kb on + strand, within ribB at 150.548 kb on - strand, within ribB at 150.589 kb on + strand, within ribB at 150.712 kb on - strand, within ribB at 150.749 kb on + strand, within ribB at 150.780 kb on + strand, within ribB at 150.827 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction fumarate electron acceptor remove 145,656 + +0.6 145,658 + -0.1 145,658 + +0.8 145,725 - +0.7 145,778 - ftn SO0139 0.12 +0.1 145,808 + ftn SO0139 0.18 -1.8 145,816 - ftn SO0139 0.19 -2.4 145,816 - ftn SO0139 0.19 -0.3 145,816 - ftn SO0139 0.19 -4.0 145,921 - ftn SO0139 0.39 +0.4 145,948 + ftn SO0139 0.44 -0.1 146,004 - ftn SO0139 0.54 -0.2 146,019 + ftn SO0139 0.57 -0.4 146,330 - -1.1 146,330 - +0.4 146,611 + +0.4 146,657 - +0.1 146,667 - +0.1 146,725 - -0.9 146,736 + -0.0 146,812 - +2.5 146,939 - SO0141 0.10 -1.1 146,986 + SO0141 0.12 +0.9 146,986 + SO0141 0.12 +2.0 146,994 - SO0141 0.12 +1.8 146,994 - SO0141 0.12 +1.2 146,994 - SO0141 0.12 +0.0 146,994 - SO0141 0.12 +1.2 146,994 - SO0141 0.12 +0.0 147,084 - SO0141 0.15 +1.4 147,084 - SO0141 0.15 +0.5 147,156 + SO0141 0.17 -2.0 147,164 - SO0141 0.17 -1.1 147,187 + SO0141 0.18 +0.5 147,187 + SO0141 0.18 +0.2 147,187 + SO0141 0.18 +0.9 147,187 + SO0141 0.18 -2.9 147,187 + SO0141 0.18 +0.9 147,187 + SO0141 0.18 +2.0 147,195 - SO0141 0.18 -2.1 147,195 - SO0141 0.18 -1.8 147,195 - SO0141 0.18 -0.4 147,195 - SO0141 0.18 -1.2 147,195 - SO0141 0.18 +2.6 147,195 - SO0141 0.18 +2.3 147,195 - SO0141 0.18 +1.0 147,195 - SO0141 0.18 -2.7 147,195 - SO0141 0.18 -0.1 147,195 - SO0141 0.18 +1.2 147,195 - SO0141 0.18 +1.2 147,195 - SO0141 0.18 +0.9 147,195 - SO0141 0.18 +1.2 147,195 - SO0141 0.18 +1.2 147,195 - SO0141 0.18 +1.1 147,195 - SO0141 0.18 +0.2 147,269 - SO0141 0.21 -0.4 147,319 + SO0141 0.22 -0.3 147,332 + SO0141 0.22 +2.6 147,378 + SO0141 0.24 -0.3 147,386 - SO0141 0.24 +1.0 147,530 + SO0141 0.29 -0.3 147,535 + SO0141 0.29 -1.3 147,535 + SO0141 0.29 -1.2 147,535 + SO0141 0.29 +1.4 147,612 - SO0141 0.31 +1.7 147,710 - SO0141 0.34 -0.2 147,777 - SO0141 0.36 -2.2 147,780 + SO0141 0.36 +0.6 147,788 - SO0141 0.37 +0.1 148,007 - SO0141 0.43 -0.3 148,024 + SO0141 0.44 +1.0 148,036 + SO0141 0.44 -0.4 148,064 + SO0141 0.45 +1.8 148,064 + SO0141 0.45 +0.5 148,201 + SO0141 0.49 +1.6 148,201 + SO0141 0.49 +2.1 148,201 + SO0141 0.49 +1.1 148,209 - SO0141 0.50 +0.6 148,209 - SO0141 0.50 +2.0 148,231 + SO0141 0.50 +1.0 148,233 - SO0141 0.50 -1.0 148,273 + SO0141 0.52 +0.4 148,281 - SO0141 0.52 +0.3 148,366 + SO0141 0.54 +1.1 148,382 - SO0141 0.55 +0.2 148,384 + SO0141 0.55 +0.6 148,512 - SO0141 0.59 +2.2 148,596 + SO0141 0.62 +0.1 148,596 + SO0141 0.62 +1.0 148,596 + SO0141 0.62 +1.0 148,596 + SO0141 0.62 +0.5 148,604 - SO0141 0.62 -1.7 148,604 - SO0141 0.62 +3.3 148,604 - SO0141 0.62 -0.3 148,604 - SO0141 0.62 +1.0 148,626 + SO0141 0.62 -1.8 148,659 - SO0141 0.63 +0.6 148,691 - SO0141 0.64 +0.4 148,749 - SO0141 0.66 -0.5 148,794 + SO0141 0.68 +1.1 148,794 + SO0141 0.68 -0.1 148,794 + SO0141 0.68 -2.6 148,794 + SO0141 0.68 +1.3 148,802 - SO0141 0.68 +1.3 148,802 - SO0141 0.68 +1.0 148,802 - SO0141 0.68 -2.4 148,831 + SO0141 0.69 +1.4 148,852 + SO0141 0.69 -3.1 148,942 + SO0141 0.72 +1.3 148,942 + SO0141 0.72 +1.5 148,950 - SO0141 0.72 +1.2 148,950 - SO0141 0.72 +0.6 148,952 - SO0141 0.73 +1.8 148,997 + SO0141 0.74 +0.3 149,016 - SO0141 0.75 +1.0 149,081 + SO0141 0.77 +1.3 149,088 + SO0141 0.77 +1.6 149,093 + SO0141 0.77 -1.2 149,200 + SO0141 0.80 +0.3 149,251 + SO0141 0.82 -2.6 149,251 + SO0141 0.82 -3.2 149,251 + SO0141 0.82 +0.7 149,257 - SO0141 0.82 +1.2 149,264 + SO0141 0.82 +0.8 149,272 - SO0141 0.82 +0.9 149,444 + SO0141 0.88 +2.0 149,444 + SO0141 0.88 +1.0 149,460 - SO0141 0.88 +1.6 149,535 + +1.0 149,535 + +0.8 149,535 + +2.9 149,535 + +0.5 149,545 - +1.0 149,549 + +1.1 149,557 - +0.5 149,623 + +0.1 149,628 + +1.4 149,733 + +0.8 149,862 - -0.0 149,887 + -1.1 149,943 + -3.0 150,105 - -1.7 150,163 - -4.1 150,185 - +0.5 150,247 + +1.2 150,318 + ribB SO0142 0.18 -0.9 150,410 + ribB SO0142 0.32 +2.3 150,418 - ribB SO0142 0.33 +0.8 150,446 + ribB SO0142 0.37 +1.0 150,548 - ribB SO0142 0.53 -1.8 150,589 + ribB SO0142 0.59 -2.6 150,712 - ribB SO0142 0.78 +1.1 150,749 + ribB SO0142 0.83 +0.7 150,780 + ribB SO0142 0.88 -0.9 150,827 + -4.2
Or see this region's nucleotide sequence