Experiment: RCH2_defined_noCarbon with Mixed culture; Sinorhizobium meliloti 1021 3:1 starting OD to Klebsiella and Glu_DLac_Acetate_mix 1 x
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt BWI76_RS26280 and BWI76_RS26285 are separated by 23 nucleotides BWI76_RS26285 and BWI76_RS26290 overlap by 4 nucleotides BWI76_RS26290 and BWI76_RS26295 are separated by 1 nucleotides BWI76_RS26295 and BWI76_RS26300 overlap by 4 nucleotides
BWI76_RS26280: BWI76_RS26280 - hypothetical protein, at 5,440,122 to 5,440,442
_RS26280
BWI76_RS26285: BWI76_RS26285 - glycerophosphodiester phosphodiesterase, at 5,440,466 to 5,441,206
_RS26285
BWI76_RS26290: BWI76_RS26290 - glycerol-3-phosphate ABC transporter ATP-binding protein, at 5,441,203 to 5,442,273
_RS26290
BWI76_RS26295: BWI76_RS26295 - glycerol-3-phosphate transporter membrane protein, at 5,442,275 to 5,443,120
_RS26295
BWI76_RS26300: BWI76_RS26300 - glycerol-3-phosphate transporter permease, at 5,443,117 to 5,444,004
_RS26300
Position (kb) 5441
5442
5443 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2 at 5440.218 kb on - strand, within BWI76_RS26280 at 5440.293 kb on + strand, within BWI76_RS26280 at 5440.293 kb on + strand, within BWI76_RS26280 at 5440.601 kb on - strand, within BWI76_RS26285 at 5440.635 kb on - strand, within BWI76_RS26285 at 5440.635 kb on - strand, within BWI76_RS26285 at 5440.698 kb on + strand, within BWI76_RS26285 at 5440.943 kb on - strand, within BWI76_RS26285 at 5441.105 kb on + strand, within BWI76_RS26285 at 5441.113 kb on - strand, within BWI76_RS26285 at 5441.472 kb on + strand, within BWI76_RS26290 at 5441.683 kb on - strand, within BWI76_RS26290 at 5441.707 kb on - strand, within BWI76_RS26290 at 5441.885 kb on + strand, within BWI76_RS26290 at 5441.912 kb on - strand at 5442.111 kb on + strand, within BWI76_RS26290 at 5442.208 kb on + strand at 5442.289 kb on + strand at 5442.291 kb on + strand at 5442.387 kb on + strand, within BWI76_RS26295 at 5442.400 kb on - strand, within BWI76_RS26295 at 5442.489 kb on - strand, within BWI76_RS26295 at 5442.517 kb on + strand, within BWI76_RS26295 at 5442.528 kb on + strand, within BWI76_RS26295 at 5442.546 kb on - strand, within BWI76_RS26295 at 5442.854 kb on - strand, within BWI76_RS26295 at 5443.010 kb on + strand, within BWI76_RS26295 at 5443.150 kb on + strand at 5443.167 kb on + strand at 5443.170 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction RCH2_defined_noCarbon with Mixed culture; Sinorhizobium meliloti 1021 3:1 starting OD to Klebsiella and Glu_DLac_Acetate_mix 1 x remove 5,440,218 - BWI76_RS26280 0.30 +1.4 5,440,293 + BWI76_RS26280 0.53 +0.1 5,440,293 + BWI76_RS26280 0.53 -0.7 5,440,601 - BWI76_RS26285 0.18 +0.5 5,440,635 - BWI76_RS26285 0.23 -0.4 5,440,635 - BWI76_RS26285 0.23 +0.7 5,440,698 + BWI76_RS26285 0.31 -2.4 5,440,943 - BWI76_RS26285 0.64 -0.8 5,441,105 + BWI76_RS26285 0.86 -1.3 5,441,113 - BWI76_RS26285 0.87 +0.3 5,441,472 + BWI76_RS26290 0.25 -3.2 5,441,683 - BWI76_RS26290 0.45 -3.2 5,441,707 - BWI76_RS26290 0.47 -3.8 5,441,885 + BWI76_RS26290 0.64 -1.4 5,441,912 - -1.3 5,442,111 + BWI76_RS26290 0.85 +2.0 5,442,208 + +0.5 5,442,289 + +0.3 5,442,291 + -0.7 5,442,387 + BWI76_RS26295 0.13 -0.3 5,442,400 - BWI76_RS26295 0.15 +0.7 5,442,489 - BWI76_RS26295 0.25 +0.6 5,442,517 + BWI76_RS26295 0.29 +0.1 5,442,528 + BWI76_RS26295 0.30 +0.8 5,442,546 - BWI76_RS26295 0.32 +0.6 5,442,854 - BWI76_RS26295 0.68 +0.8 5,443,010 + BWI76_RS26295 0.87 +0.6 5,443,150 + -2.7 5,443,167 + -1.3 5,443,170 - -2.9
Or see this region's nucleotide sequence