Experiment: RCH2_defined_noCarbon with Mixed culture; Sinorhizobium meliloti 1021 3:1 starting OD to Klebsiella and Glu_DLac_Acetate_mix 1 x
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt BWI76_RS23335 and BWI76_RS23340 overlap by 4 nucleotides BWI76_RS23340 and BWI76_RS23345 are separated by 68 nucleotides BWI76_RS23345 and BWI76_RS23350 are separated by 7 nucleotides
BWI76_RS23335: BWI76_RS23335 - GNAT family acetyltransferase, at 4,865,817 to 4,866,296
_RS23335
BWI76_RS23340: BWI76_RS23340 - transcriptional regulator, at 4,866,293 to 4,867,066
_RS23340
BWI76_RS23345: BWI76_RS23345 - glycoside hydrolase, at 4,867,135 to 4,868,562
_RS23345
BWI76_RS23350: BWI76_RS23350 - PTS system lactose/cellobiose family transporter subunit IIC, at 4,868,570 to 4,869,907
_RS23350
Position (kb) 4867
4868
4869 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3
4 at 4866.161 kb on + strand, within BWI76_RS23335 at 4866.251 kb on + strand at 4866.274 kb on + strand at 4866.283 kb on + strand at 4866.296 kb on + strand at 4866.597 kb on + strand, within BWI76_RS23340 at 4866.858 kb on - strand, within BWI76_RS23340 at 4867.718 kb on + strand, within BWI76_RS23345 at 4868.058 kb on + strand, within BWI76_RS23345 at 4868.198 kb on - strand, within BWI76_RS23345 at 4868.198 kb on - strand, within BWI76_RS23345 at 4868.252 kb on - strand, within BWI76_RS23345 at 4868.511 kb on + strand at 4868.906 kb on + strand, within BWI76_RS23350 at 4868.914 kb on - strand, within BWI76_RS23350 at 4868.966 kb on + strand, within BWI76_RS23350 at 4869.070 kb on + strand, within BWI76_RS23350 at 4869.078 kb on - strand, within BWI76_RS23350 at 4869.126 kb on + strand, within BWI76_RS23350 at 4869.167 kb on - strand at 4869.206 kb on + strand, within BWI76_RS23350 at 4869.242 kb on + strand, within BWI76_RS23350 at 4869.250 kb on - strand, within BWI76_RS23350 at 4869.262 kb on + strand, within BWI76_RS23350
Per-strain Table
Position Strand Gene LocusTag Fraction RCH2_defined_noCarbon with Mixed culture; Sinorhizobium meliloti 1021 3:1 starting OD to Klebsiella and Glu_DLac_Acetate_mix 1 x remove 4,866,161 + BWI76_RS23335 0.72 +0.2 4,866,251 + +0.6 4,866,274 + -2.2 4,866,283 + -3.4 4,866,296 + +1.5 4,866,597 + BWI76_RS23340 0.39 -0.3 4,866,858 - BWI76_RS23340 0.73 -1.0 4,867,718 + BWI76_RS23345 0.41 +1.0 4,868,058 + BWI76_RS23345 0.65 +1.8 4,868,198 - BWI76_RS23345 0.74 -3.6 4,868,198 - BWI76_RS23345 0.74 +0.3 4,868,252 - BWI76_RS23345 0.78 +1.4 4,868,511 + -0.4 4,868,906 + BWI76_RS23350 0.25 +0.2 4,868,914 - BWI76_RS23350 0.26 -2.7 4,868,966 + BWI76_RS23350 0.30 -0.1 4,869,070 + BWI76_RS23350 0.37 -0.6 4,869,078 - BWI76_RS23350 0.38 +4.0 4,869,126 + BWI76_RS23350 0.42 +0.7 4,869,167 - -0.4 4,869,206 + BWI76_RS23350 0.48 +1.0 4,869,242 + BWI76_RS23350 0.50 +1.0 4,869,250 - BWI76_RS23350 0.51 -0.5 4,869,262 + BWI76_RS23350 0.52 -2.3
Or see this region's nucleotide sequence