Experiment: RCH2_defined_noCarbon with Mixed culture; Sinorhizobium meliloti 1021 3:1 starting OD to Klebsiella and Glu_DLac_Acetate_mix 1 x
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt BWI76_RS22625 and BWI76_RS22630 overlap by 4 nucleotides BWI76_RS22630 and BWI76_RS22635 are separated by 107 nucleotides BWI76_RS22635 and BWI76_RS22640 overlap by 4 nucleotides BWI76_RS22640 and BWI76_RS22645 are separated by 65 nucleotides
BWI76_RS22625: BWI76_RS22625 - transcriptional regulator, at 4,717,038 to 4,717,457
_RS22625
BWI76_RS22630: BWI76_RS22630 - LysR family transcriptional regulator, at 4,717,454 to 4,718,341
_RS22630
BWI76_RS22635: BWI76_RS22635 - MFS transporter, at 4,718,449 to 4,719,663
_RS22635
BWI76_RS22640: BWI76_RS22640 - hypothetical protein, at 4,719,660 to 4,720,037
_RS22640
BWI76_RS22645: BWI76_RS22645 - RNA polymerase sigma factor RpoS, at 4,720,103 to 4,721,095
_RS22645
Position (kb) 4718
4719
4720 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2 at 4717.503 kb on + strand at 4717.513 kb on - strand at 4717.569 kb on + strand, within BWI76_RS22630 at 4717.715 kb on + strand, within BWI76_RS22630 at 4717.731 kb on + strand, within BWI76_RS22630 at 4717.805 kb on + strand, within BWI76_RS22630 at 4718.126 kb on - strand, within BWI76_RS22630 at 4718.250 kb on + strand, within BWI76_RS22630 at 4718.258 kb on - strand at 4718.269 kb on - strand at 4718.558 kb on + strand at 4718.763 kb on - strand, within BWI76_RS22635 at 4719.000 kb on + strand, within BWI76_RS22635 at 4719.391 kb on + strand, within BWI76_RS22635 at 4719.399 kb on - strand, within BWI76_RS22635 at 4719.458 kb on - strand, within BWI76_RS22635 at 4719.536 kb on + strand, within BWI76_RS22635 at 4719.652 kb on - strand at 4719.904 kb on + strand, within BWI76_RS22640 at 4719.917 kb on - strand, within BWI76_RS22640 at 4720.041 kb on - strand at 4720.112 kb on + strand at 4720.220 kb on + strand, within BWI76_RS22645 at 4720.220 kb on + strand, within BWI76_RS22645 at 4720.258 kb on + strand, within BWI76_RS22645 at 4720.279 kb on - strand, within BWI76_RS22645
Per-strain Table
Position Strand Gene LocusTag Fraction RCH2_defined_noCarbon with Mixed culture; Sinorhizobium meliloti 1021 3:1 starting OD to Klebsiella and Glu_DLac_Acetate_mix 1 x remove 4,717,503 + -0.4 4,717,513 - -1.2 4,717,569 + BWI76_RS22630 0.13 +1.1 4,717,715 + BWI76_RS22630 0.29 +0.3 4,717,731 + BWI76_RS22630 0.31 +1.0 4,717,805 + BWI76_RS22630 0.40 -1.2 4,718,126 - BWI76_RS22630 0.76 +0.8 4,718,250 + BWI76_RS22630 0.90 -4.0 4,718,258 - +1.0 4,718,269 - +0.2 4,718,558 + +0.4 4,718,763 - BWI76_RS22635 0.26 -4.7 4,719,000 + BWI76_RS22635 0.45 -4.3 4,719,391 + BWI76_RS22635 0.78 -2.5 4,719,399 - BWI76_RS22635 0.78 -1.7 4,719,458 - BWI76_RS22635 0.83 -0.0 4,719,536 + BWI76_RS22635 0.89 -4.1 4,719,652 - +1.0 4,719,904 + BWI76_RS22640 0.65 +0.1 4,719,917 - BWI76_RS22640 0.68 -0.1 4,720,041 - -0.8 4,720,112 + +0.8 4,720,220 + BWI76_RS22645 0.12 +0.3 4,720,220 + BWI76_RS22645 0.12 +1.5 4,720,258 + BWI76_RS22645 0.16 +2.2 4,720,279 - BWI76_RS22645 0.18 -2.6
Or see this region's nucleotide sequence