Experiment: RCH2_defined_noCarbon with Mixed culture; Sinorhizobium meliloti 1021 3:1 starting OD to Klebsiella and Glu_DLac_Acetate_mix 1 x
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt BWI76_RS21865 and BWI76_RS21870 overlap by 4 nucleotides BWI76_RS21870 and BWI76_RS21875 are separated by 297 nucleotides
BWI76_RS21865: BWI76_RS21865 - hypothetical protein, at 4,568,938 to 4,570,542
_RS21865
BWI76_RS21870: BWI76_RS21870 - hypothetical protein, at 4,570,539 to 4,570,943
_RS21870
BWI76_RS21875: BWI76_RS21875 - LysR family transcriptional regulator, at 4,571,241 to 4,572,152
_RS21875
Position (kb)
4570
4571 Strain fitness (log2 ratio)
-5
-4
-3
-2
-1
0
1
2
3
4 at 4569.541 kb on + strand, within BWI76_RS21865 at 4569.541 kb on + strand, within BWI76_RS21865 at 4569.541 kb on + strand, within BWI76_RS21865 at 4569.549 kb on - strand, within BWI76_RS21865 at 4569.549 kb on - strand, within BWI76_RS21865 at 4569.549 kb on - strand, within BWI76_RS21865 at 4569.553 kb on - strand, within BWI76_RS21865 at 4569.617 kb on - strand, within BWI76_RS21865 at 4569.622 kb on - strand, within BWI76_RS21865 at 4569.622 kb on - strand, within BWI76_RS21865 at 4569.626 kb on + strand, within BWI76_RS21865 at 4569.631 kb on - strand, within BWI76_RS21865 at 4569.631 kb on - strand, within BWI76_RS21865 at 4569.633 kb on + strand, within BWI76_RS21865 at 4569.633 kb on + strand, within BWI76_RS21865 at 4569.633 kb on + strand, within BWI76_RS21865 at 4569.638 kb on + strand, within BWI76_RS21865 at 4569.639 kb on - strand, within BWI76_RS21865 at 4569.641 kb on - strand, within BWI76_RS21865 at 4569.652 kb on - strand, within BWI76_RS21865 at 4569.652 kb on - strand, within BWI76_RS21865 at 4569.652 kb on - strand, within BWI76_RS21865 at 4569.655 kb on + strand, within BWI76_RS21865 at 4569.657 kb on + strand, within BWI76_RS21865 at 4569.663 kb on - strand, within BWI76_RS21865 at 4569.663 kb on - strand, within BWI76_RS21865 at 4569.676 kb on - strand, within BWI76_RS21865 at 4569.680 kb on + strand, within BWI76_RS21865 at 4569.680 kb on + strand, within BWI76_RS21865 at 4569.680 kb on + strand, within BWI76_RS21865 at 4569.688 kb on - strand, within BWI76_RS21865 at 4569.688 kb on - strand, within BWI76_RS21865 at 4569.701 kb on + strand, within BWI76_RS21865 at 4569.709 kb on - strand, within BWI76_RS21865 at 4569.737 kb on - strand, within BWI76_RS21865 at 4569.740 kb on + strand, within BWI76_RS21865 at 4569.843 kb on - strand, within BWI76_RS21865 at 4569.918 kb on + strand, within BWI76_RS21865 at 4569.980 kb on + strand, within BWI76_RS21865 at 4569.998 kb on - strand, within BWI76_RS21865 at 4569.999 kb on - strand, within BWI76_RS21865 at 4570.018 kb on - strand, within BWI76_RS21865 at 4570.222 kb on - strand, within BWI76_RS21865 at 4570.234 kb on - strand, within BWI76_RS21865 at 4570.234 kb on - strand, within BWI76_RS21865 at 4570.234 kb on - strand, within BWI76_RS21865 at 4570.257 kb on - strand, within BWI76_RS21865 at 4570.264 kb on - strand, within BWI76_RS21865 at 4570.305 kb on + strand, within BWI76_RS21865 at 4570.383 kb on - strand at 4570.387 kb on + strand at 4570.389 kb on - strand at 4570.389 kb on - strand at 4570.436 kb on + strand at 4570.439 kb on + strand at 4570.441 kb on - strand at 4570.445 kb on + strand at 4570.451 kb on - strand at 4570.459 kb on - strand at 4570.462 kb on - strand at 4570.472 kb on - strand at 4570.540 kb on + strand at 4570.550 kb on + strand at 4570.664 kb on + strand, within BWI76_RS21870 at 4570.664 kb on + strand, within BWI76_RS21870 at 4570.664 kb on + strand, within BWI76_RS21870 at 4570.664 kb on + strand, within BWI76_RS21870 at 4570.664 kb on + strand, within BWI76_RS21870 at 4570.664 kb on + strand, within BWI76_RS21870 at 4570.672 kb on - strand, within BWI76_RS21870 at 4570.682 kb on - strand, within BWI76_RS21870 at 4570.694 kb on - strand, within BWI76_RS21870 at 4570.699 kb on + strand, within BWI76_RS21870 at 4570.707 kb on - strand, within BWI76_RS21870 at 4570.707 kb on - strand, within BWI76_RS21870 at 4570.731 kb on - strand, within BWI76_RS21870 at 4570.793 kb on - strand, within BWI76_RS21870 at 4570.807 kb on + strand, within BWI76_RS21870 at 4570.807 kb on + strand, within BWI76_RS21870 at 4570.812 kb on + strand, within BWI76_RS21870 at 4570.820 kb on - strand, within BWI76_RS21870 at 4571.023 kb on + strand at 4571.091 kb on + strand at 4571.091 kb on + strand at 4571.091 kb on + strand at 4571.164 kb on + strand at 4571.236 kb on + strand at 4571.236 kb on + strand at 4571.244 kb on - strand at 4571.248 kb on + strand at 4571.248 kb on + strand at 4571.248 kb on + strand at 4571.248 kb on + strand at 4571.248 kb on + strand at 4571.252 kb on + strand at 4571.257 kb on + strand at 4571.257 kb on + strand at 4571.257 kb on + strand at 4571.265 kb on - strand at 4571.265 kb on - strand at 4571.265 kb on - strand at 4571.274 kb on - strand at 4571.274 kb on - strand at 4571.275 kb on - strand at 4571.277 kb on - strand at 4571.293 kb on + strand at 4571.294 kb on + strand at 4571.303 kb on + strand at 4571.309 kb on + strand at 4571.310 kb on - strand at 4571.311 kb on - strand at 4571.311 kb on - strand at 4571.317 kb on - strand at 4571.334 kb on - strand, within BWI76_RS21875 at 4571.396 kb on + strand, within BWI76_RS21875 at 4571.401 kb on + strand, within BWI76_RS21875 at 4571.407 kb on + strand, within BWI76_RS21875 at 4571.453 kb on + strand, within BWI76_RS21875 at 4571.460 kb on - strand, within BWI76_RS21875 at 4571.491 kb on + strand, within BWI76_RS21875 at 4571.562 kb on - strand, within BWI76_RS21875 at 4571.619 kb on + strand, within BWI76_RS21875 at 4571.626 kb on + strand, within BWI76_RS21875 at 4571.626 kb on + strand, within BWI76_RS21875 at 4571.634 kb on - strand, within BWI76_RS21875 at 4571.875 kb on + strand, within BWI76_RS21875
Per-strain Table
Position Strand Gene LocusTag Fraction RCH2_defined_noCarbon with Mixed culture; Sinorhizobium meliloti 1021 3:1 starting OD to Klebsiella and Glu_DLac_Acetate_mix 1 x remove 4,569,541 + BWI76_RS21865 0.38 -2.0 4,569,541 + BWI76_RS21865 0.38 -4.1 4,569,541 + BWI76_RS21865 0.38 -3.2 4,569,549 - BWI76_RS21865 0.38 -0.6 4,569,549 - BWI76_RS21865 0.38 -3.2 4,569,549 - BWI76_RS21865 0.38 -1.1 4,569,553 - BWI76_RS21865 0.38 -0.9 4,569,617 - BWI76_RS21865 0.42 +0.4 4,569,622 - BWI76_RS21865 0.43 +1.2 4,569,622 - BWI76_RS21865 0.43 -2.1 4,569,626 + BWI76_RS21865 0.43 +3.4 4,569,631 - BWI76_RS21865 0.43 -4.8 4,569,631 - BWI76_RS21865 0.43 +0.5 4,569,633 + BWI76_RS21865 0.43 -1.8 4,569,633 + BWI76_RS21865 0.43 +1.2 4,569,633 + BWI76_RS21865 0.43 -0.6 4,569,638 + BWI76_RS21865 0.44 +0.1 4,569,639 - BWI76_RS21865 0.44 -2.1 4,569,641 - BWI76_RS21865 0.44 -0.6 4,569,652 - BWI76_RS21865 0.44 -0.1 4,569,652 - BWI76_RS21865 0.44 +0.2 4,569,652 - BWI76_RS21865 0.44 -0.0 4,569,655 + BWI76_RS21865 0.45 -0.4 4,569,657 + BWI76_RS21865 0.45 -2.8 4,569,663 - BWI76_RS21865 0.45 -2.6 4,569,663 - BWI76_RS21865 0.45 -1.7 4,569,676 - BWI76_RS21865 0.46 +1.2 4,569,680 + BWI76_RS21865 0.46 -1.6 4,569,680 + BWI76_RS21865 0.46 -3.5 4,569,680 + BWI76_RS21865 0.46 -3.7 4,569,688 - BWI76_RS21865 0.47 -3.0 4,569,688 - BWI76_RS21865 0.47 -0.0 4,569,701 + BWI76_RS21865 0.48 -0.3 4,569,709 - BWI76_RS21865 0.48 -4.0 4,569,737 - BWI76_RS21865 0.50 -2.4 4,569,740 + BWI76_RS21865 0.50 +1.1 4,569,843 - BWI76_RS21865 0.56 -1.4 4,569,918 + BWI76_RS21865 0.61 -1.6 4,569,980 + BWI76_RS21865 0.65 -2.8 4,569,998 - BWI76_RS21865 0.66 -3.0 4,569,999 - BWI76_RS21865 0.66 -4.1 4,570,018 - BWI76_RS21865 0.67 -3.0 4,570,222 - BWI76_RS21865 0.80 -3.3 4,570,234 - BWI76_RS21865 0.81 +2.4 4,570,234 - BWI76_RS21865 0.81 +0.9 4,570,234 - BWI76_RS21865 0.81 +0.9 4,570,257 - BWI76_RS21865 0.82 +0.7 4,570,264 - BWI76_RS21865 0.83 -2.0 4,570,305 + BWI76_RS21865 0.85 -2.4 4,570,383 - +0.3 4,570,387 + -2.0 4,570,389 - -0.4 4,570,389 - +0.4 4,570,436 + -1.6 4,570,439 + -1.8 4,570,441 - +0.8 4,570,445 + -1.4 4,570,451 - +1.2 4,570,459 - +1.5 4,570,462 - +1.7 4,570,472 - +1.8 4,570,540 + -1.1 4,570,550 + -0.7 4,570,664 + BWI76_RS21870 0.31 +0.2 4,570,664 + BWI76_RS21870 0.31 +1.2 4,570,664 + BWI76_RS21870 0.31 -2.1 4,570,664 + BWI76_RS21870 0.31 -2.4 4,570,664 + BWI76_RS21870 0.31 -3.2 4,570,664 + BWI76_RS21870 0.31 +0.6 4,570,672 - BWI76_RS21870 0.33 +1.2 4,570,682 - BWI76_RS21870 0.35 -3.5 4,570,694 - BWI76_RS21870 0.38 +2.1 4,570,699 + BWI76_RS21870 0.40 -1.8 4,570,707 - BWI76_RS21870 0.41 +1.2 4,570,707 - BWI76_RS21870 0.41 +0.2 4,570,731 - BWI76_RS21870 0.47 -0.4 4,570,793 - BWI76_RS21870 0.63 +0.5 4,570,807 + BWI76_RS21870 0.66 +2.3 4,570,807 + BWI76_RS21870 0.66 -2.3 4,570,812 + BWI76_RS21870 0.67 -0.4 4,570,820 - BWI76_RS21870 0.69 -1.1 4,571,023 + -1.8 4,571,091 + +1.2 4,571,091 + -2.5 4,571,091 + +1.2 4,571,164 + -1.6 4,571,236 + -0.1 4,571,236 + -0.1 4,571,244 - +0.2 4,571,248 + +4.2 4,571,248 + +0.2 4,571,248 + +1.1 4,571,248 + -2.1 4,571,248 + -0.2 4,571,252 + -3.5 4,571,257 + +0.2 4,571,257 + -2.0 4,571,257 + +1.2 4,571,265 - +1.0 4,571,265 - -3.0 4,571,265 - -1.1 4,571,274 - +0.4 4,571,274 - -2.0 4,571,275 - +1.4 4,571,277 - -0.4 4,571,293 + -0.4 4,571,294 + +0.6 4,571,303 + -2.4 4,571,309 + -1.8 4,571,310 - +0.4 4,571,311 - -3.6 4,571,311 - +0.4 4,571,317 - -3.9 4,571,334 - BWI76_RS21875 0.10 +0.4 4,571,396 + BWI76_RS21875 0.17 +2.4 4,571,401 + BWI76_RS21875 0.18 -2.4 4,571,407 + BWI76_RS21875 0.18 -0.1 4,571,453 + BWI76_RS21875 0.23 -3.1 4,571,460 - BWI76_RS21875 0.24 +2.3 4,571,491 + BWI76_RS21875 0.27 +2.0 4,571,562 - BWI76_RS21875 0.35 -0.9 4,571,619 + BWI76_RS21875 0.41 -0.8 4,571,626 + BWI76_RS21875 0.42 +0.3 4,571,626 + BWI76_RS21875 0.42 +1.8 4,571,634 - BWI76_RS21875 0.43 -0.1 4,571,875 + BWI76_RS21875 0.70 +0.8
Or see this region's nucleotide sequence