Experiment: RCH2_defined_noCarbon with Mixed culture; Sinorhizobium meliloti 1021 3:1 starting OD to Klebsiella and Glu_DLac_Acetate_mix 1 x
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt BWI76_RS16575 and BWI76_RS16580 overlap by 1 nucleotides BWI76_RS16580 and BWI76_RS16585 are separated by 8 nucleotides
BWI76_RS16575: BWI76_RS16575 - cytochrome ubiquinol oxidase subunit I, at 3,432,635 to 3,434,038
_RS16575
BWI76_RS16580: BWI76_RS16580 - ubiquinol oxidase subunit II, at 3,434,038 to 3,435,048
_RS16580
BWI76_RS16585: BWI76_RS16585 - trehalose synthase, at 3,435,057 to 3,436,682
_RS16585
Position (kb)
3434
3435
3436 Strain fitness (log2 ratio)
-4
-3
-2
-1
0
1 at 3433.136 kb on + strand, within BWI76_RS16575 at 3433.334 kb on - strand at 3433.826 kb on - strand, within BWI76_RS16575 at 3433.837 kb on + strand, within BWI76_RS16575 at 3433.885 kb on + strand, within BWI76_RS16575 at 3433.893 kb on - strand, within BWI76_RS16575 at 3434.224 kb on - strand, within BWI76_RS16580 at 3434.417 kb on + strand, within BWI76_RS16580 at 3434.425 kb on - strand, within BWI76_RS16580 at 3434.464 kb on - strand, within BWI76_RS16580 at 3434.785 kb on - strand, within BWI76_RS16580 at 3434.796 kb on + strand, within BWI76_RS16580 at 3434.990 kb on - strand at 3435.161 kb on + strand at 3435.207 kb on + strand at 3435.265 kb on - strand, within BWI76_RS16585 at 3435.490 kb on + strand, within BWI76_RS16585 at 3435.671 kb on + strand, within BWI76_RS16585 at 3435.757 kb on - strand, within BWI76_RS16585 at 3435.930 kb on + strand, within BWI76_RS16585 at 3436.004 kb on - strand, within BWI76_RS16585
Per-strain Table
Position Strand Gene LocusTag Fraction RCH2_defined_noCarbon with Mixed culture; Sinorhizobium meliloti 1021 3:1 starting OD to Klebsiella and Glu_DLac_Acetate_mix 1 x remove 3,433,136 + BWI76_RS16575 0.36 +0.2 3,433,334 - +0.1 3,433,826 - BWI76_RS16575 0.85 +1.1 3,433,837 + BWI76_RS16575 0.86 +0.9 3,433,885 + BWI76_RS16575 0.89 +1.4 3,433,893 - BWI76_RS16575 0.90 +0.6 3,434,224 - BWI76_RS16580 0.18 -1.7 3,434,417 + BWI76_RS16580 0.37 -1.9 3,434,425 - BWI76_RS16580 0.38 -0.4 3,434,464 - BWI76_RS16580 0.42 -0.4 3,434,785 - BWI76_RS16580 0.74 -0.1 3,434,796 + BWI76_RS16580 0.75 +0.2 3,434,990 - +0.2 3,435,161 + +0.3 3,435,207 + -1.7 3,435,265 - BWI76_RS16585 0.13 +0.0 3,435,490 + BWI76_RS16585 0.27 -3.8 3,435,671 + BWI76_RS16585 0.38 -0.5 3,435,757 - BWI76_RS16585 0.43 -0.5 3,435,930 + BWI76_RS16585 0.54 -0.5 3,436,004 - BWI76_RS16585 0.58 +0.3
Or see this region's nucleotide sequence