Experiment: RCH2_defined_noCarbon with Mixed culture; Sinorhizobium meliloti 1021 3:1 starting OD to Klebsiella and Glu_DLac_Acetate_mix 1 x
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt BWI76_RS16505 and BWI76_RS16510 are separated by 551 nucleotides BWI76_RS16510 and BWI76_RS16515 are separated by 18 nucleotides
BWI76_RS16505: BWI76_RS16505 - MFS transporter, at 3,420,784 to 3,421,950
_RS16505
BWI76_RS16510: BWI76_RS16510 - transcriptional repressor PurR, at 3,422,502 to 3,423,527
_RS16510
BWI76_RS16515: BWI76_RS16515 - LysR family transcriptional regulator, at 3,423,546 to 3,424,457
_RS16515
Position (kb)
3422
3423
3424 Strain fitness (log2 ratio)
-4
-3
-2
-1
0
1
2 at 3421.570 kb on - strand, within BWI76_RS16505 at 3421.632 kb on + strand, within BWI76_RS16505 at 3421.640 kb on - strand, within BWI76_RS16505 at 3422.104 kb on - strand at 3422.139 kb on - strand at 3422.385 kb on + strand at 3422.404 kb on + strand at 3422.509 kb on + strand at 3422.765 kb on + strand, within BWI76_RS16510 at 3422.766 kb on + strand, within BWI76_RS16510 at 3422.766 kb on + strand, within BWI76_RS16510 at 3423.615 kb on - strand at 3423.615 kb on - strand at 3423.853 kb on + strand, within BWI76_RS16515 at 3424.076 kb on + strand, within BWI76_RS16515 at 3424.390 kb on - strand at 3424.511 kb on + strand at 3424.518 kb on - strand at 3424.519 kb on - strand at 3424.519 kb on - strand at 3424.523 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction RCH2_defined_noCarbon with Mixed culture; Sinorhizobium meliloti 1021 3:1 starting OD to Klebsiella and Glu_DLac_Acetate_mix 1 x remove 3,421,570 - BWI76_RS16505 0.67 +1.2 3,421,632 + BWI76_RS16505 0.73 +1.1 3,421,640 - BWI76_RS16505 0.73 +2.0 3,422,104 - +1.1 3,422,139 - -1.9 3,422,385 + -4.1 3,422,404 + +0.6 3,422,509 + +1.1 3,422,765 + BWI76_RS16510 0.26 +0.6 3,422,766 + BWI76_RS16510 0.26 +1.4 3,422,766 + BWI76_RS16510 0.26 +0.3 3,423,615 - +0.9 3,423,615 - +0.5 3,423,853 + BWI76_RS16515 0.34 -3.3 3,424,076 + BWI76_RS16515 0.58 -0.4 3,424,390 - -3.3 3,424,511 + -0.2 3,424,518 - +1.7 3,424,519 - +0.5 3,424,519 - +1.5 3,424,523 + +0.5
Or see this region's nucleotide sequence