Experiment: RCH2_defined_noCarbon with Mixed culture; Sinorhizobium meliloti 1021 3:1 starting OD to Klebsiella and Glu_DLac_Acetate_mix 1 x
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt BWI76_RS13785 and BWI76_RS13790 overlap by 4 nucleotides BWI76_RS13790 and BWI76_RS13795 are separated by 10 nucleotides BWI76_RS13795 and BWI76_RS13800 are separated by 383 nucleotides
BWI76_RS13785: BWI76_RS13785 - ABC transporter permease, at 2,874,685 to 2,875,536
_RS13785
BWI76_RS13790: BWI76_RS13790 - peptide ABC transporter permease, at 2,875,533 to 2,876,477
_RS13790
BWI76_RS13795: BWI76_RS13795 - ABC transporter substrate binding protein, at 2,876,488 to 2,878,110
_RS13795
BWI76_RS13800: BWI76_RS13800 - zinc-dependent alcohol dehydrogenase, at 2,878,494 to 2,879,504
_RS13800
Position (kb)
2876
2877
2878
2879 Strain fitness (log2 ratio)
-4
-3
-2
-1
0
1
2
3 at 2875.640 kb on - strand, within BWI76_RS13790 at 2875.700 kb on - strand, within BWI76_RS13790 at 2875.855 kb on + strand, within BWI76_RS13790 at 2875.877 kb on + strand, within BWI76_RS13790 at 2875.877 kb on + strand, within BWI76_RS13790 at 2875.885 kb on - strand, within BWI76_RS13790 at 2875.885 kb on - strand, within BWI76_RS13790 at 2875.994 kb on + strand, within BWI76_RS13790 at 2876.486 kb on + strand at 2876.494 kb on - strand at 2876.549 kb on + strand at 2876.621 kb on + strand at 2876.639 kb on - strand at 2876.898 kb on + strand, within BWI76_RS13795 at 2877.017 kb on - strand, within BWI76_RS13795 at 2877.091 kb on + strand, within BWI76_RS13795 at 2877.096 kb on + strand, within BWI76_RS13795 at 2877.160 kb on - strand, within BWI76_RS13795 at 2877.164 kb on + strand, within BWI76_RS13795 at 2877.165 kb on - strand, within BWI76_RS13795 at 2877.347 kb on + strand, within BWI76_RS13795 at 2877.808 kb on + strand, within BWI76_RS13795 at 2877.808 kb on + strand, within BWI76_RS13795 at 2877.816 kb on - strand, within BWI76_RS13795 at 2877.816 kb on - strand, within BWI76_RS13795 at 2878.274 kb on - strand at 2878.320 kb on + strand at 2878.322 kb on - strand at 2878.326 kb on + strand at 2878.419 kb on + strand at 2878.514 kb on + strand at 2878.537 kb on + strand at 2878.670 kb on + strand, within BWI76_RS13800 at 2878.680 kb on + strand, within BWI76_RS13800 at 2878.925 kb on + strand, within BWI76_RS13800 at 2878.968 kb on + strand, within BWI76_RS13800 at 2879.023 kb on + strand, within BWI76_RS13800
Per-strain Table
Position Strand Gene LocusTag Fraction RCH2_defined_noCarbon with Mixed culture; Sinorhizobium meliloti 1021 3:1 starting OD to Klebsiella and Glu_DLac_Acetate_mix 1 x remove 2,875,640 - BWI76_RS13790 0.11 +1.1 2,875,700 - BWI76_RS13790 0.18 +0.1 2,875,855 + BWI76_RS13790 0.34 +0.4 2,875,877 + BWI76_RS13790 0.36 -3.9 2,875,877 + BWI76_RS13790 0.36 +0.8 2,875,885 - BWI76_RS13790 0.37 +0.0 2,875,885 - BWI76_RS13790 0.37 -1.2 2,875,994 + BWI76_RS13790 0.49 -2.5 2,876,486 + +0.5 2,876,494 - +0.2 2,876,549 + +1.0 2,876,621 + -2.8 2,876,639 - -2.5 2,876,898 + BWI76_RS13795 0.25 +1.5 2,877,017 - BWI76_RS13795 0.33 +0.5 2,877,091 + BWI76_RS13795 0.37 +1.0 2,877,096 + BWI76_RS13795 0.37 +0.9 2,877,160 - BWI76_RS13795 0.41 +1.8 2,877,164 + BWI76_RS13795 0.42 +1.0 2,877,165 - BWI76_RS13795 0.42 -0.2 2,877,347 + BWI76_RS13795 0.53 +0.1 2,877,808 + BWI76_RS13795 0.81 +1.3 2,877,808 + BWI76_RS13795 0.81 -3.5 2,877,816 - BWI76_RS13795 0.82 -1.6 2,877,816 - BWI76_RS13795 0.82 -0.2 2,878,274 - +0.0 2,878,320 + +0.3 2,878,322 - +1.0 2,878,326 + -2.3 2,878,419 + -1.7 2,878,514 + -0.5 2,878,537 + -2.3 2,878,670 + BWI76_RS13800 0.17 +0.4 2,878,680 + BWI76_RS13800 0.18 +3.0 2,878,925 + BWI76_RS13800 0.43 +0.6 2,878,968 + BWI76_RS13800 0.47 -1.7 2,879,023 + BWI76_RS13800 0.52 +1.0
Or see this region's nucleotide sequence