Experiment: RCH2_defined_noCarbon with Mixed culture; Sinorhizobium meliloti 1021 3:1 starting OD to Klebsiella and Glu_DLac_Acetate_mix 1 x
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt BWI76_RS11890 and BWI76_RS11895 are separated by 16 nucleotides BWI76_RS11895 and BWI76_RS11900 overlap by 29 nucleotides BWI76_RS11900 and BWI76_RS11905 overlap by 4 nucleotides
BWI76_RS11890: BWI76_RS11890 - glycosyl hydrolase, at 2,501,942 to 2,504,299
_RS11890
BWI76_RS11895: BWI76_RS11895 - AraC family transcriptional regulator, at 2,504,316 to 2,505,290
_RS11895
BWI76_RS11900: BWI76_RS11900 - cob(I)yrinic acid a,c-diamide adenosyltransferase, at 2,505,262 to 2,505,852
_RS11900
BWI76_RS11905: BWI76_RS11905 - NAD(P)-dependent oxidoreductase, at 2,505,849 to 2,506,610
_RS11905
Position (kb)
2504
2505
2506 Strain fitness (log2 ratio)
-3
-2
-1
0
1 at 2503.941 kb on - strand, within BWI76_RS11890 at 2504.082 kb on - strand at 2504.192 kb on + strand at 2504.206 kb on - strand at 2504.550 kb on - strand, within BWI76_RS11895 at 2504.629 kb on - strand, within BWI76_RS11895 at 2505.106 kb on - strand, within BWI76_RS11895 at 2505.235 kb on + strand at 2505.235 kb on + strand at 2505.322 kb on - strand, within BWI76_RS11900 at 2505.820 kb on + strand at 2506.228 kb on - strand, within BWI76_RS11905
Per-strain Table
Position Strand Gene LocusTag Fraction RCH2_defined_noCarbon with Mixed culture; Sinorhizobium meliloti 1021 3:1 starting OD to Klebsiella and Glu_DLac_Acetate_mix 1 x remove 2,503,941 - BWI76_RS11890 0.85 -0.4 2,504,082 - -2.3 2,504,192 + +0.4 2,504,206 - +0.1 2,504,550 - BWI76_RS11895 0.24 -2.1 2,504,629 - BWI76_RS11895 0.32 +1.3 2,505,106 - BWI76_RS11895 0.81 +0.4 2,505,235 + +0.3 2,505,235 + +1.3 2,505,322 - BWI76_RS11900 0.10 -3.6 2,505,820 + -0.8 2,506,228 - BWI76_RS11905 0.50 -3.0
Or see this region's nucleotide sequence