Experiment: RCH2_defined_noCarbon with Mixed culture; Sinorhizobium meliloti 1021 3:1 starting OD to Klebsiella and Glu_DLac_Acetate_mix 1 x
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt BWI76_RS09700 and BWI76_RS09705 are separated by 42 nucleotides BWI76_RS09705 and BWI76_RS09710 overlap by 1 nucleotides BWI76_RS09710 and BWI76_RS09715 are separated by 12 nucleotides
BWI76_RS09700: BWI76_RS09700 - PTS IIA-like nitrogen-regulatory protein PtsN, at 2,034,090 to 2,034,527
_RS09700
BWI76_RS09705: BWI76_RS09705 - transketolase, at 2,034,570 to 2,035,481
_RS09705
BWI76_RS09710: BWI76_RS09710 - transketolase, at 2,035,481 to 2,036,278
_RS09710
BWI76_RS09715: BWI76_RS09715 - hypothetical protein, at 2,036,291 to 2,037,556
_RS09715
Position (kb)
2035
2036
2037 Strain fitness (log2 ratio)
-2
-1
0
1 at 2034.588 kb on - strand at 2034.588 kb on - strand at 2034.774 kb on + strand, within BWI76_RS09705 at 2035.011 kb on + strand, within BWI76_RS09705 at 2035.019 kb on - strand, within BWI76_RS09705 at 2035.019 kb on - strand, within BWI76_RS09705 at 2035.080 kb on + strand, within BWI76_RS09705 at 2035.382 kb on + strand, within BWI76_RS09705 at 2035.448 kb on + strand at 2035.605 kb on + strand, within BWI76_RS09710 at 2035.965 kb on + strand, within BWI76_RS09710 at 2036.065 kb on + strand, within BWI76_RS09710 at 2036.263 kb on - strand at 2036.407 kb on + strand at 2036.608 kb on - strand, within BWI76_RS09715 at 2036.608 kb on - strand, within BWI76_RS09715 at 2036.663 kb on - strand, within BWI76_RS09715 at 2036.895 kb on + strand, within BWI76_RS09715 at 2036.998 kb on - strand, within BWI76_RS09715 at 2037.174 kb on + strand, within BWI76_RS09715 at 2037.228 kb on - strand, within BWI76_RS09715
Per-strain Table
Position Strand Gene LocusTag Fraction RCH2_defined_noCarbon with Mixed culture; Sinorhizobium meliloti 1021 3:1 starting OD to Klebsiella and Glu_DLac_Acetate_mix 1 x remove 2,034,588 - +1.0 2,034,588 - +0.3 2,034,774 + BWI76_RS09705 0.22 +1.5 2,035,011 + BWI76_RS09705 0.48 -2.6 2,035,019 - BWI76_RS09705 0.49 +0.8 2,035,019 - BWI76_RS09705 0.49 +0.7 2,035,080 + BWI76_RS09705 0.56 +1.4 2,035,382 + BWI76_RS09705 0.89 -1.5 2,035,448 + -1.5 2,035,605 + BWI76_RS09710 0.16 +0.2 2,035,965 + BWI76_RS09710 0.61 -2.3 2,036,065 + BWI76_RS09710 0.73 -1.6 2,036,263 - +1.2 2,036,407 + -2.1 2,036,608 - BWI76_RS09715 0.25 +0.0 2,036,608 - BWI76_RS09715 0.25 -0.1 2,036,663 - BWI76_RS09715 0.29 -1.5 2,036,895 + BWI76_RS09715 0.48 +0.3 2,036,998 - BWI76_RS09715 0.56 +0.1 2,037,174 + BWI76_RS09715 0.70 +0.2 2,037,228 - BWI76_RS09715 0.74 -1.5
Or see this region's nucleotide sequence