Experiment: RCH2_defined_noCarbon with Mixed culture; Sinorhizobium meliloti 1021 3:1 starting OD to Klebsiella and Glu_DLac_Acetate_mix 1 x
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt BWI76_RS06855 and BWI76_RS06860 are separated by 233 nucleotides BWI76_RS06860 and BWI76_RS06865 are separated by 163 nucleotides
BWI76_RS06855: BWI76_RS06855 - Kef family K(+) transporter, at 1,438,294 to 1,439,970
_RS06855
BWI76_RS06860: BWI76_RS06860 - MFS transporter, at 1,440,204 to 1,441,424
_RS06860
BWI76_RS06865: BWI76_RS06865 - bifunctional UDP-sugar hydrolase/5'-nucleotidase, at 1,441,588 to 1,443,240
_RS06865
Position (kb)
1440
1441
1442 Strain fitness (log2 ratio)
-4
-3
-2
-1
0
1
2 at 1439.238 kb on + strand, within BWI76_RS06855 at 1439.648 kb on + strand, within BWI76_RS06855 at 1439.662 kb on + strand, within BWI76_RS06855 at 1439.918 kb on - strand at 1439.985 kb on + strand at 1440.419 kb on - strand, within BWI76_RS06860 at 1440.501 kb on - strand, within BWI76_RS06860 at 1440.769 kb on + strand, within BWI76_RS06860 at 1440.848 kb on + strand, within BWI76_RS06860 at 1440.991 kb on - strand, within BWI76_RS06860 at 1441.071 kb on + strand, within BWI76_RS06860 at 1441.117 kb on - strand, within BWI76_RS06860 at 1441.117 kb on - strand, within BWI76_RS06860 at 1441.124 kb on + strand, within BWI76_RS06860 at 1441.132 kb on - strand, within BWI76_RS06860 at 1441.132 kb on - strand, within BWI76_RS06860 at 1441.214 kb on + strand, within BWI76_RS06860 at 1441.217 kb on - strand at 1441.393 kb on + strand at 1441.393 kb on + strand at 1441.393 kb on + strand at 1441.398 kb on + strand at 1441.503 kb on - strand at 1441.773 kb on + strand, within BWI76_RS06865 at 1442.267 kb on + strand, within BWI76_RS06865
Per-strain Table
Position Strand Gene LocusTag Fraction RCH2_defined_noCarbon with Mixed culture; Sinorhizobium meliloti 1021 3:1 starting OD to Klebsiella and Glu_DLac_Acetate_mix 1 x remove 1,439,238 + BWI76_RS06855 0.56 -1.2 1,439,648 + BWI76_RS06855 0.81 -1.7 1,439,662 + BWI76_RS06855 0.82 +0.3 1,439,918 - +0.8 1,439,985 + +0.6 1,440,419 - BWI76_RS06860 0.18 -0.2 1,440,501 - BWI76_RS06860 0.24 -1.2 1,440,769 + BWI76_RS06860 0.46 +0.2 1,440,848 + BWI76_RS06860 0.53 -4.0 1,440,991 - BWI76_RS06860 0.64 +1.0 1,441,071 + BWI76_RS06860 0.71 +0.5 1,441,117 - BWI76_RS06860 0.75 -2.4 1,441,117 - BWI76_RS06860 0.75 +2.3 1,441,124 + BWI76_RS06860 0.75 -1.3 1,441,132 - BWI76_RS06860 0.76 -0.1 1,441,132 - BWI76_RS06860 0.76 -1.9 1,441,214 + BWI76_RS06860 0.83 +0.6 1,441,217 - -1.2 1,441,393 + +0.4 1,441,393 + +0.0 1,441,393 + -1.0 1,441,398 + -0.4 1,441,503 - -2.7 1,441,773 + BWI76_RS06865 0.11 +0.7 1,442,267 + BWI76_RS06865 0.41 -3.2
Or see this region's nucleotide sequence