Experiment: RCH2_defined_noCarbon with Mixed culture; Sinorhizobium meliloti 1021 3:1 starting OD to Klebsiella and Glu_DLac_Acetate_mix 1 x
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt BWI76_RS02835 and BWI76_RS02840 are separated by 202 nucleotides BWI76_RS02840 and BWI76_RS02845 are separated by 620 nucleotides
BWI76_RS02835: BWI76_RS02835 - iron-containing alcohol dehydrogenase, at 579,704 to 580,846
_RS02835
BWI76_RS02840: BWI76_RS02840 - methylmalonate-semialdehyde dehydrogenase (CoA acylating), at 581,049 to 582,560
_RS02840
BWI76_RS02845: BWI76_RS02845 - hypothetical protein, at 583,181 to 583,732
_RS02845
Position (kb) 581
582
583 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2
3
4
5 at 580.063 kb on + strand, within BWI76_RS02835 at 580.064 kb on + strand, within BWI76_RS02835 at 580.076 kb on - strand, within BWI76_RS02835 at 580.080 kb on + strand, within BWI76_RS02835 at 580.080 kb on + strand, within BWI76_RS02835 at 580.080 kb on + strand, within BWI76_RS02835 at 580.080 kb on + strand, within BWI76_RS02835 at 580.088 kb on - strand, within BWI76_RS02835 at 580.095 kb on + strand, within BWI76_RS02835 at 580.105 kb on + strand, within BWI76_RS02835 at 580.105 kb on + strand, within BWI76_RS02835 at 580.105 kb on + strand, within BWI76_RS02835 at 580.105 kb on + strand, within BWI76_RS02835 at 580.113 kb on - strand, within BWI76_RS02835 at 580.113 kb on - strand, within BWI76_RS02835 at 580.118 kb on + strand, within BWI76_RS02835 at 580.118 kb on + strand, within BWI76_RS02835 at 580.118 kb on + strand, within BWI76_RS02835 at 580.118 kb on + strand, within BWI76_RS02835 at 580.126 kb on - strand, within BWI76_RS02835 at 580.126 kb on - strand, within BWI76_RS02835 at 580.126 kb on - strand, within BWI76_RS02835 at 580.126 kb on - strand, within BWI76_RS02835 at 580.144 kb on + strand, within BWI76_RS02835 at 580.149 kb on + strand, within BWI76_RS02835 at 580.175 kb on + strand, within BWI76_RS02835 at 580.183 kb on - strand, within BWI76_RS02835 at 580.186 kb on + strand, within BWI76_RS02835 at 580.220 kb on + strand, within BWI76_RS02835 at 580.252 kb on - strand, within BWI76_RS02835 at 580.252 kb on - strand, within BWI76_RS02835 at 580.252 kb on - strand, within BWI76_RS02835 at 580.252 kb on - strand, within BWI76_RS02835 at 580.252 kb on - strand, within BWI76_RS02835 at 580.254 kb on + strand, within BWI76_RS02835 at 580.262 kb on - strand, within BWI76_RS02835 at 580.267 kb on + strand, within BWI76_RS02835 at 580.268 kb on + strand, within BWI76_RS02835 at 580.268 kb on + strand, within BWI76_RS02835 at 580.268 kb on + strand, within BWI76_RS02835 at 580.275 kb on - strand, within BWI76_RS02835 at 580.277 kb on + strand, within BWI76_RS02835 at 580.277 kb on + strand, within BWI76_RS02835 at 580.359 kb on + strand, within BWI76_RS02835 at 580.414 kb on + strand, within BWI76_RS02835 at 580.441 kb on - strand, within BWI76_RS02835 at 580.477 kb on + strand, within BWI76_RS02835 at 580.558 kb on + strand, within BWI76_RS02835 at 580.565 kb on + strand, within BWI76_RS02835 at 580.566 kb on - strand, within BWI76_RS02835 at 580.566 kb on - strand, within BWI76_RS02835 at 580.566 kb on - strand at 580.566 kb on - strand, within BWI76_RS02835 at 580.579 kb on + strand at 580.584 kb on + strand, within BWI76_RS02835 at 580.584 kb on + strand, within BWI76_RS02835 at 580.587 kb on - strand, within BWI76_RS02835 at 580.592 kb on - strand, within BWI76_RS02835 at 580.593 kb on + strand, within BWI76_RS02835 at 580.601 kb on + strand, within BWI76_RS02835 at 580.601 kb on - strand, within BWI76_RS02835 at 580.602 kb on - strand, within BWI76_RS02835 at 580.602 kb on - strand, within BWI76_RS02835 at 580.602 kb on - strand, within BWI76_RS02835 at 580.602 kb on - strand, within BWI76_RS02835 at 580.612 kb on + strand at 580.612 kb on + strand, within BWI76_RS02835 at 580.612 kb on + strand, within BWI76_RS02835 at 580.612 kb on + strand, within BWI76_RS02835 at 580.613 kb on - strand, within BWI76_RS02835 at 580.620 kb on - strand, within BWI76_RS02835 at 580.620 kb on - strand, within BWI76_RS02835 at 580.620 kb on - strand, within BWI76_RS02835 at 580.620 kb on - strand, within BWI76_RS02835 at 580.620 kb on - strand, within BWI76_RS02835 at 580.632 kb on + strand, within BWI76_RS02835 at 580.632 kb on + strand, within BWI76_RS02835 at 580.640 kb on - strand, within BWI76_RS02835 at 580.653 kb on - strand, within BWI76_RS02835 at 580.658 kb on - strand, within BWI76_RS02835 at 580.658 kb on - strand, within BWI76_RS02835 at 580.707 kb on + strand, within BWI76_RS02835 at 580.707 kb on + strand, within BWI76_RS02835 at 580.715 kb on - strand, within BWI76_RS02835 at 580.715 kb on - strand, within BWI76_RS02835 at 580.740 kb on - strand at 580.779 kb on + strand at 580.779 kb on + strand at 580.785 kb on - strand at 580.785 kb on - strand at 580.787 kb on - strand at 580.787 kb on - strand at 580.787 kb on - strand at 580.789 kb on + strand at 580.818 kb on - strand at 580.818 kb on - strand at 580.825 kb on + strand at 580.830 kb on + strand at 580.833 kb on - strand at 580.833 kb on - strand at 580.835 kb on + strand at 580.835 kb on + strand at 580.835 kb on + strand at 580.836 kb on + strand at 580.836 kb on + strand at 580.843 kb on - strand at 580.843 kb on - strand at 580.843 kb on - strand at 580.843 kb on - strand at 580.843 kb on - strand at 580.843 kb on - strand at 580.843 kb on - strand at 580.843 kb on - strand at 580.843 kb on - strand at 580.843 kb on - strand at 580.843 kb on - strand at 580.843 kb on - strand at 580.849 kb on - strand at 580.904 kb on + strand at 580.968 kb on - strand at 581.015 kb on - strand at 581.060 kb on + strand at 581.061 kb on + strand at 581.062 kb on + strand at 581.062 kb on + strand at 581.070 kb on - strand at 581.075 kb on - strand at 581.094 kb on + strand at 581.099 kb on + strand at 581.099 kb on + strand at 581.099 kb on + strand at 581.099 kb on + strand at 581.102 kb on - strand at 581.104 kb on + strand at 581.107 kb on - strand at 581.107 kb on - strand at 581.107 kb on - strand at 581.107 kb on - strand at 581.107 kb on - strand at 581.109 kb on + strand at 581.117 kb on - strand at 581.132 kb on - strand at 581.134 kb on + strand at 581.136 kb on + strand at 581.142 kb on - strand at 581.142 kb on - strand at 581.152 kb on + strand at 581.159 kb on - strand at 581.159 kb on - strand at 581.159 kb on - strand at 581.159 kb on - strand at 581.164 kb on - strand at 581.164 kb on - strand at 581.166 kb on + strand at 581.166 kb on + strand at 581.166 kb on + strand at 581.166 kb on + strand at 581.166 kb on + strand at 581.166 kb on + strand at 581.169 kb on - strand at 581.174 kb on - strand at 581.174 kb on - strand at 581.174 kb on - strand at 581.174 kb on - strand at 581.174 kb on - strand at 581.179 kb on + strand at 581.187 kb on - strand at 581.197 kb on - strand at 581.197 kb on - strand at 581.215 kb on - strand, within BWI76_RS02840 at 581.306 kb on + strand, within BWI76_RS02840 at 581.309 kb on + strand, within BWI76_RS02840 at 581.365 kb on + strand, within BWI76_RS02840 at 581.375 kb on + strand, within BWI76_RS02840 at 581.375 kb on + strand, within BWI76_RS02840 at 581.380 kb on + strand, within BWI76_RS02840 at 581.380 kb on + strand, within BWI76_RS02840 at 581.382 kb on + strand, within BWI76_RS02840 at 581.382 kb on + strand, within BWI76_RS02840 at 581.383 kb on - strand, within BWI76_RS02840 at 581.388 kb on - strand, within BWI76_RS02840 at 581.390 kb on - strand, within BWI76_RS02840 at 581.390 kb on - strand, within BWI76_RS02840 at 581.390 kb on - strand, within BWI76_RS02840 at 581.429 kb on - strand, within BWI76_RS02840 at 581.452 kb on - strand, within BWI76_RS02840 at 581.461 kb on - strand, within BWI76_RS02840 at 581.506 kb on + strand, within BWI76_RS02840 at 581.509 kb on - strand, within BWI76_RS02840 at 581.514 kb on - strand, within BWI76_RS02840 at 581.525 kb on + strand, within BWI76_RS02840 at 581.533 kb on - strand, within BWI76_RS02840 at 581.555 kb on - strand, within BWI76_RS02840 at 581.562 kb on + strand, within BWI76_RS02840 at 581.570 kb on - strand, within BWI76_RS02840 at 581.588 kb on - strand, within BWI76_RS02840 at 581.699 kb on + strand, within BWI76_RS02840 at 581.709 kb on + strand, within BWI76_RS02840 at 581.709 kb on - strand, within BWI76_RS02840 at 581.775 kb on + strand, within BWI76_RS02840 at 581.847 kb on - strand, within BWI76_RS02840 at 581.883 kb on + strand, within BWI76_RS02840 at 581.948 kb on - strand, within BWI76_RS02840 at 581.971 kb on + strand, within BWI76_RS02840 at 582.007 kb on - strand, within BWI76_RS02840 at 582.014 kb on - strand, within BWI76_RS02840 at 582.022 kb on - strand, within BWI76_RS02840 at 582.022 kb on - strand, within BWI76_RS02840 at 582.142 kb on + strand, within BWI76_RS02840 at 582.167 kb on - strand, within BWI76_RS02840 at 582.216 kb on + strand, within BWI76_RS02840 at 582.382 kb on - strand, within BWI76_RS02840 at 582.402 kb on - strand, within BWI76_RS02840 at 582.433 kb on - strand at 582.436 kb on + strand at 582.436 kb on + strand at 582.436 kb on + strand at 582.436 kb on + strand at 582.455 kb on - strand at 582.455 kb on - strand at 582.475 kb on + strand at 582.484 kb on - strand at 582.487 kb on + strand at 582.524 kb on - strand at 582.548 kb on + strand at 582.573 kb on + strand at 582.608 kb on + strand at 582.616 kb on + strand at 582.676 kb on + strand at 582.731 kb on - strand at 582.963 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction RCH2_defined_noCarbon with Mixed culture; Sinorhizobium meliloti 1021 3:1 starting OD to Klebsiella and Glu_DLac_Acetate_mix 1 x remove 580,063 + BWI76_RS02835 0.31 +0.1 580,064 + BWI76_RS02835 0.31 -0.4 580,076 - BWI76_RS02835 0.33 +0.1 580,080 + BWI76_RS02835 0.33 +0.7 580,080 + BWI76_RS02835 0.33 +3.6 580,080 + BWI76_RS02835 0.33 -1.3 580,080 + BWI76_RS02835 0.33 -1.2 580,088 - BWI76_RS02835 0.34 -0.9 580,095 + BWI76_RS02835 0.34 +0.6 580,105 + BWI76_RS02835 0.35 +0.1 580,105 + BWI76_RS02835 0.35 +0.9 580,105 + BWI76_RS02835 0.35 +0.1 580,105 + BWI76_RS02835 0.35 +1.3 580,113 - BWI76_RS02835 0.36 +0.4 580,113 - BWI76_RS02835 0.36 -2.6 580,118 + BWI76_RS02835 0.36 -3.6 580,118 + BWI76_RS02835 0.36 -2.7 580,118 + BWI76_RS02835 0.36 -0.2 580,118 + BWI76_RS02835 0.36 +0.6 580,126 - BWI76_RS02835 0.37 +0.4 580,126 - BWI76_RS02835 0.37 +2.3 580,126 - BWI76_RS02835 0.37 -1.8 580,126 - BWI76_RS02835 0.37 -2.2 580,144 + BWI76_RS02835 0.38 +0.9 580,149 + BWI76_RS02835 0.39 -0.3 580,175 + BWI76_RS02835 0.41 -0.2 580,183 - BWI76_RS02835 0.42 +2.0 580,186 + BWI76_RS02835 0.42 +0.3 580,220 + BWI76_RS02835 0.45 -1.2 580,252 - BWI76_RS02835 0.48 -2.7 580,252 - BWI76_RS02835 0.48 -1.8 580,252 - BWI76_RS02835 0.48 -3.2 580,252 - BWI76_RS02835 0.48 +2.4 580,252 - BWI76_RS02835 0.48 +0.3 580,254 + BWI76_RS02835 0.48 -0.9 580,262 - BWI76_RS02835 0.49 -0.7 580,267 + BWI76_RS02835 0.49 +0.3 580,268 + BWI76_RS02835 0.49 -0.3 580,268 + BWI76_RS02835 0.49 -0.9 580,268 + BWI76_RS02835 0.49 -0.3 580,275 - BWI76_RS02835 0.50 +1.3 580,277 + BWI76_RS02835 0.50 +0.4 580,277 + BWI76_RS02835 0.50 +1.7 580,359 + BWI76_RS02835 0.57 -3.0 580,414 + BWI76_RS02835 0.62 -0.7 580,441 - BWI76_RS02835 0.64 +3.0 580,477 + BWI76_RS02835 0.68 +3.1 580,558 + BWI76_RS02835 0.75 -0.2 580,565 + BWI76_RS02835 0.75 +1.3 580,566 - BWI76_RS02835 0.75 +0.4 580,566 - BWI76_RS02835 0.75 -0.2 580,566 - +0.3 580,566 - BWI76_RS02835 0.75 -2.5 580,579 + +1.3 580,584 + BWI76_RS02835 0.77 +1.7 580,584 + BWI76_RS02835 0.77 -1.0 580,587 - BWI76_RS02835 0.77 +0.3 580,592 - BWI76_RS02835 0.78 -0.2 580,593 + BWI76_RS02835 0.78 -2.2 580,601 + BWI76_RS02835 0.78 -2.5 580,601 - BWI76_RS02835 0.78 +0.4 580,602 - BWI76_RS02835 0.79 +0.3 580,602 - BWI76_RS02835 0.79 +1.3 580,602 - BWI76_RS02835 0.79 -3.4 580,602 - BWI76_RS02835 0.79 +3.2 580,612 + -1.2 580,612 + BWI76_RS02835 0.79 -0.2 580,612 + BWI76_RS02835 0.79 +0.3 580,612 + BWI76_RS02835 0.79 +0.6 580,613 - BWI76_RS02835 0.80 +0.3 580,620 - BWI76_RS02835 0.80 -1.1 580,620 - BWI76_RS02835 0.80 +0.9 580,620 - BWI76_RS02835 0.80 -0.7 580,620 - BWI76_RS02835 0.80 +1.6 580,620 - BWI76_RS02835 0.80 -0.9 580,632 + BWI76_RS02835 0.81 +1.6 580,632 + BWI76_RS02835 0.81 -0.2 580,640 - BWI76_RS02835 0.82 +0.3 580,653 - BWI76_RS02835 0.83 +2.0 580,658 - BWI76_RS02835 0.83 -1.0 580,658 - BWI76_RS02835 0.83 -0.2 580,707 + BWI76_RS02835 0.88 -1.3 580,707 + BWI76_RS02835 0.88 -0.2 580,715 - BWI76_RS02835 0.88 +1.3 580,715 - BWI76_RS02835 0.88 -0.6 580,740 - -2.6 580,779 + -1.0 580,779 + +0.3 580,785 - -1.2 580,785 - -2.8 580,787 - +2.0 580,787 - -2.7 580,787 - -1.3 580,789 + +1.3 580,818 - +0.9 580,818 - +0.3 580,825 + -2.6 580,830 + -1.2 580,833 - +1.2 580,833 - +0.9 580,835 + +4.9 580,835 + +1.8 580,835 + -3.2 580,836 + +0.8 580,836 + +0.2 580,843 - -0.2 580,843 - -0.1 580,843 - +1.0 580,843 - +2.2 580,843 - +1.3 580,843 - -1.7 580,843 - +0.8 580,843 - +0.2 580,843 - -1.5 580,843 - -1.6 580,843 - +0.8 580,843 - +1.0 580,849 - -0.7 580,904 + -1.2 580,968 - -3.8 581,015 - -0.0 581,060 + -3.2 581,061 + +1.3 581,062 + -3.6 581,062 + +0.1 581,070 - -0.1 581,075 - -1.3 581,094 + -2.2 581,099 + -1.8 581,099 + +1.1 581,099 + -1.5 581,099 + -1.8 581,102 - -1.7 581,104 + +0.5 581,107 - +0.5 581,107 - +0.0 581,107 - -0.4 581,107 - -1.1 581,107 - -1.2 581,109 + -2.4 581,117 - +0.3 581,132 - +0.7 581,134 + -1.2 581,136 + -3.8 581,142 - +0.7 581,142 - +0.3 581,152 + +1.5 581,159 - +0.6 581,159 - -3.6 581,159 - -0.3 581,159 - -0.3 581,164 - +1.1 581,164 - -4.1 581,166 + -0.4 581,166 + +0.3 581,166 + -0.4 581,166 + +1.4 581,166 + -0.1 581,166 + +2.0 581,169 - +0.4 581,174 - +1.5 581,174 - -2.7 581,174 - +0.6 581,174 - +0.6 581,174 - -1.0 581,179 + -2.1 581,187 - -0.1 581,197 - -0.7 581,197 - +0.3 581,215 - BWI76_RS02840 0.11 +0.3 581,306 + BWI76_RS02840 0.17 -3.9 581,309 + BWI76_RS02840 0.17 -0.9 581,365 + BWI76_RS02840 0.21 +0.2 581,375 + BWI76_RS02840 0.22 +3.3 581,375 + BWI76_RS02840 0.22 -0.1 581,380 + BWI76_RS02840 0.22 +0.8 581,380 + BWI76_RS02840 0.22 +1.3 581,382 + BWI76_RS02840 0.22 +0.4 581,382 + BWI76_RS02840 0.22 -1.2 581,383 - BWI76_RS02840 0.22 -3.5 581,388 - BWI76_RS02840 0.22 -0.5 581,390 - BWI76_RS02840 0.23 -0.2 581,390 - BWI76_RS02840 0.23 +0.4 581,390 - BWI76_RS02840 0.23 -0.1 581,429 - BWI76_RS02840 0.25 -0.4 581,452 - BWI76_RS02840 0.27 -0.1 581,461 - BWI76_RS02840 0.27 -1.5 581,506 + BWI76_RS02840 0.30 +0.8 581,509 - BWI76_RS02840 0.30 -0.8 581,514 - BWI76_RS02840 0.31 -2.3 581,525 + BWI76_RS02840 0.31 +1.2 581,533 - BWI76_RS02840 0.32 -0.0 581,555 - BWI76_RS02840 0.33 +1.5 581,562 + BWI76_RS02840 0.34 +0.8 581,570 - BWI76_RS02840 0.34 +1.1 581,588 - BWI76_RS02840 0.36 +1.0 581,699 + BWI76_RS02840 0.43 +0.6 581,709 + BWI76_RS02840 0.44 -1.7 581,709 - BWI76_RS02840 0.44 +1.6 581,775 + BWI76_RS02840 0.48 +0.5 581,847 - BWI76_RS02840 0.53 -0.3 581,883 + BWI76_RS02840 0.55 +1.4 581,948 - BWI76_RS02840 0.59 -0.4 581,971 + BWI76_RS02840 0.61 -0.5 582,007 - BWI76_RS02840 0.63 +1.6 582,014 - BWI76_RS02840 0.64 +0.8 582,022 - BWI76_RS02840 0.64 +0.1 582,022 - BWI76_RS02840 0.64 +0.1 582,142 + BWI76_RS02840 0.72 -1.1 582,167 - BWI76_RS02840 0.74 -1.0 582,216 + BWI76_RS02840 0.77 +0.9 582,382 - BWI76_RS02840 0.88 +0.3 582,402 - BWI76_RS02840 0.89 -0.2 582,433 - +1.1 582,436 + +0.4 582,436 + -3.6 582,436 + +0.7 582,436 + -0.8 582,455 - -3.5 582,455 - -1.6 582,475 + -0.3 582,484 - +0.1 582,487 + -2.6 582,524 - -0.4 582,548 + +0.9 582,573 + -0.6 582,608 + +0.4 582,616 + +3.6 582,676 + +1.4 582,731 - -0.2 582,963 + +0.6
Or see this region's nucleotide sequence