Experiment: RCH2_defined_noCarbon with Mixed culture; Sinorhizobium meliloti 1021 3:1 starting OD to Klebsiella and Glu_DLac_Acetate_mix 1 x
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt BWI76_RS02805 and BWI76_RS02810 overlap by 14 nucleotides BWI76_RS02810 and BWI76_RS02815 are separated by 44 nucleotides
BWI76_RS02805: BWI76_RS02805 - sugar ABC transporter permease, at 572,805 to 573,830
_RS02805
BWI76_RS02810: BWI76_RS02810 - sugar ABC transporter permease YjfF, at 573,817 to 574,803
_RS02810
BWI76_RS02815: BWI76_RS02815 - fructose-bisphosphatase class I, at 574,848 to 575,846
_RS02815
Position (kb) 573
574
575 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 572.865 kb on - strand at 573.046 kb on + strand, within BWI76_RS02805 at 573.263 kb on + strand, within BWI76_RS02805 at 573.268 kb on + strand, within BWI76_RS02805 at 573.526 kb on + strand, within BWI76_RS02805 at 573.558 kb on + strand, within BWI76_RS02805 at 573.881 kb on - strand at 574.280 kb on - strand, within BWI76_RS02810 at 574.280 kb on - strand, within BWI76_RS02810 at 574.549 kb on - strand, within BWI76_RS02810 at 574.598 kb on + strand, within BWI76_RS02810 at 574.690 kb on - strand, within BWI76_RS02810 at 574.892 kb on - strand at 575.069 kb on + strand, within BWI76_RS02815 at 575.351 kb on - strand, within BWI76_RS02815 at 575.631 kb on - strand, within BWI76_RS02815 at 575.769 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction RCH2_defined_noCarbon with Mixed culture; Sinorhizobium meliloti 1021 3:1 starting OD to Klebsiella and Glu_DLac_Acetate_mix 1 x remove 572,865 - +1.1 573,046 + BWI76_RS02805 0.23 +1.4 573,263 + BWI76_RS02805 0.45 +1.2 573,268 + BWI76_RS02805 0.45 +1.6 573,526 + BWI76_RS02805 0.70 +0.5 573,558 + BWI76_RS02805 0.73 +1.0 573,881 - +1.4 574,280 - BWI76_RS02810 0.47 +0.3 574,280 - BWI76_RS02810 0.47 -2.1 574,549 - BWI76_RS02810 0.74 -0.3 574,598 + BWI76_RS02810 0.79 -1.1 574,690 - BWI76_RS02810 0.88 -2.9 574,892 - -1.0 575,069 + BWI76_RS02815 0.22 -0.2 575,351 - BWI76_RS02815 0.50 -0.2 575,631 - BWI76_RS02815 0.78 +1.9 575,769 + -2.8
Or see this region's nucleotide sequence