Strain Fitness in Desulfovibrio vulgaris Hildenborough JW710 around DVU3362

Experiment: MoLS4 with TEMED 20mM (N)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntrfaE and DVU3362 are separated by 81 nucleotidesDVU3362 and sun are separated by 96 nucleotides DVU3361: rfaE - ADP-heptose synthase, putative (TIGR), at 3,531,411 to 3,532,436 rfaE DVU3362: DVU3362 - conserved hypothetical protein (TIGR), at 3,532,518 to 3,532,898 DVU3362 DVU3363: sun - sun protein (TIGR), at 3,532,995 to 3,534,518 sun Position (kb) 3532 3533Strain fitness (log2 ratio) -2 -1 0 1 2 3at 3532.406 kb on + strandat 3532.408 kb on + strandat 3532.450 kb on + strandat 3532.450 kb on + strandat 3532.453 kb on - strandat 3532.458 kb on - strandat 3532.525 kb on + strandat 3532.635 kb on + strand, within DVU3362at 3532.636 kb on + strand, within DVU3362at 3532.641 kb on - strand, within DVU3362at 3532.641 kb on - strand, within DVU3362at 3532.641 kb on - strand, within DVU3362at 3532.643 kb on - strand, within DVU3362at 3532.646 kb on + strand, within DVU3362at 3532.661 kb on - strand, within DVU3362at 3532.679 kb on + strand, within DVU3362at 3532.757 kb on + strand, within DVU3362at 3532.762 kb on + strand, within DVU3362at 3532.765 kb on - strand, within DVU3362at 3532.770 kb on - strand, within DVU3362at 3532.770 kb on - strand, within DVU3362at 3532.770 kb on - strand, within DVU3362at 3532.835 kb on + strand, within DVU3362at 3532.893 kb on - strandat 3532.908 kb on + strandat 3532.913 kb on + strandat 3532.992 kb on + strandat 3532.992 kb on + strandat 3533.001 kb on - strandat 3533.022 kb on + strandat 3533.025 kb on - strandat 3533.025 kb on - strandat 3533.025 kb on - strandat 3533.048 kb on + strandat 3533.051 kb on - strandat 3533.141 kb on + strandat 3533.146 kb on + strandat 3533.154 kb on - strand, within sunat 3533.159 kb on - strand, within sunat 3533.178 kb on + strand, within sunat 3533.178 kb on + strand, within sunat 3533.277 kb on + strand, within sunat 3533.289 kb on + strand, within sunat 3533.314 kb on - strand, within sunat 3533.319 kb on - strand, within sunat 3533.319 kb on - strand, within sunat 3533.326 kb on + strand, within sunat 3533.326 kb on + strand, within sunat 3533.329 kb on - strand, within sunat 3533.331 kb on + strand, within sunat 3533.336 kb on + strand, within sunat 3533.336 kb on + strand, within sunat 3533.344 kb on - strand, within sunat 3533.344 kb on - strand, within sunat 3533.344 kb on - strand, within sunat 3533.344 kb on - strand, within sunat 3533.354 kb on + strand, within sunat 3533.439 kb on - strand, within sunat 3533.468 kb on - strand, within sunat 3533.477 kb on + strand, within sunat 3533.480 kb on - strand, within sunat 3533.484 kb on + strand, within sunat 3533.484 kb on + strand, within sunat 3533.484 kb on + strand, within sunat 3533.558 kb on - strand, within sunat 3533.618 kb on - strand, within sunat 3533.619 kb on - strand, within sunat 3533.692 kb on + strand, within sunat 3533.739 kb on + strand, within sunat 3533.753 kb on - strand, within sunat 3533.770 kb on + strand, within sunat 3533.771 kb on - strand, within sunat 3533.800 kb on + strand, within sunat 3533.800 kb on + strand, within sunat 3533.808 kb on - strand, within sunat 3533.808 kb on - strand, within sunat 3533.865 kb on - strand, within sunat 3533.881 kb on + strand, within sunat 3533.896 kb on + strand, within sun

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Per-strain Table

Position Strand Gene LocusTag Fraction MoLS4 with TEMED 20mM (N)
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3,532,406 + +1.3
3,532,408 + -2.0
3,532,450 + -0.6
3,532,450 + -0.0
3,532,453 - -0.7
3,532,458 - +0.4
3,532,525 + -0.3
3,532,635 + DVU3362 0.31 +1.5
3,532,636 + DVU3362 0.31 +0.4
3,532,641 - DVU3362 0.32 +1.0
3,532,641 - DVU3362 0.32 -0.1
3,532,641 - DVU3362 0.32 -0.1
3,532,643 - DVU3362 0.33 -0.3
3,532,646 + DVU3362 0.34 -0.4
3,532,661 - DVU3362 0.38 -0.0
3,532,679 + DVU3362 0.42 +0.2
3,532,757 + DVU3362 0.63 -0.1
3,532,762 + DVU3362 0.64 +1.5
3,532,765 - DVU3362 0.65 -1.6
3,532,770 - DVU3362 0.66 +0.7
3,532,770 - DVU3362 0.66 +1.5
3,532,770 - DVU3362 0.66 +1.0
3,532,835 + DVU3362 0.83 -0.8
3,532,893 - +0.3
3,532,908 + -1.0
3,532,913 + -1.1
3,532,992 + -0.8
3,532,992 + -0.8
3,533,001 - -0.6
3,533,022 + +1.5
3,533,025 - +0.5
3,533,025 - -1.3
3,533,025 - +0.3
3,533,048 + +0.2
3,533,051 - -0.1
3,533,141 + +0.6
3,533,146 + +0.2
3,533,154 - sun DVU3363 0.10 -0.1
3,533,159 - sun DVU3363 0.11 +0.5
3,533,178 + sun DVU3363 0.12 +1.5
3,533,178 + sun DVU3363 0.12 -0.2
3,533,277 + sun DVU3363 0.19 +0.8
3,533,289 + sun DVU3363 0.19 +0.5
3,533,314 - sun DVU3363 0.21 +1.0
3,533,319 - sun DVU3363 0.21 -0.6
3,533,319 - sun DVU3363 0.21 -0.9
3,533,326 + sun DVU3363 0.22 -1.0
3,533,326 + sun DVU3363 0.22 -1.5
3,533,329 - sun DVU3363 0.22 +0.2
3,533,331 + sun DVU3363 0.22 -0.5
3,533,336 + sun DVU3363 0.22 -0.4
3,533,336 + sun DVU3363 0.22 +0.2
3,533,344 - sun DVU3363 0.23 -0.3
3,533,344 - sun DVU3363 0.23 +0.4
3,533,344 - sun DVU3363 0.23 -0.9
3,533,344 - sun DVU3363 0.23 -0.0
3,533,354 + sun DVU3363 0.24 +0.5
3,533,439 - sun DVU3363 0.29 -0.0
3,533,468 - sun DVU3363 0.31 +0.8
3,533,477 + sun DVU3363 0.32 +0.8
3,533,480 - sun DVU3363 0.32 -0.2
3,533,484 + sun DVU3363 0.32 +1.0
3,533,484 + sun DVU3363 0.32 -0.9
3,533,484 + sun DVU3363 0.32 -0.3
3,533,558 - sun DVU3363 0.37 +1.5
3,533,618 - sun DVU3363 0.41 +0.3
3,533,619 - sun DVU3363 0.41 +0.3
3,533,692 + sun DVU3363 0.46 -0.6
3,533,739 + sun DVU3363 0.49 +0.5
3,533,753 - sun DVU3363 0.50 -1.8
3,533,770 + sun DVU3363 0.51 -0.0
3,533,771 - sun DVU3363 0.51 +0.1
3,533,800 + sun DVU3363 0.53 +0.5
3,533,800 + sun DVU3363 0.53 +3.3
3,533,808 - sun DVU3363 0.53 -1.3
3,533,808 - sun DVU3363 0.53 +0.5
3,533,865 - sun DVU3363 0.57 +0.2
3,533,881 + sun DVU3363 0.58 -0.5
3,533,896 + sun DVU3363 0.59 +0.3

Or see this region's nucleotide sequence