Strain Fitness in Desulfovibrio vulgaris Hildenborough JW710 around DVU1789

Experiment: MoLS4 with TEMED 20mM (N)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntrpoD and dnaG overlap by 8 nucleotidesdnaG and DVU1790 are separated by 32 nucleotides DVU1788: rpoD - RNA polymerase sigma-70 factor (TIGR), at 1,851,002 to 1,852,774 rpoD DVU1789: dnaG - DNA primase (TIGR), at 1,852,767 to 1,854,485 dnaG DVU1790: DVU1790 - MutS2 family protein (TIGR), at 1,854,518 to 1,856,833 DVU1790 Position (kb) 1852 1853 1854 1855Strain fitness (log2 ratio) -1 0 1at 1854.471 kb on - strandat 1854.491 kb on + strandat 1854.636 kb on - strandat 1854.696 kb on + strandat 1854.742 kb on + strandat 1854.807 kb on - strand, within DVU1790at 1854.847 kb on + strand, within DVU1790at 1854.897 kb on - strand, within DVU1790at 1854.907 kb on - strand, within DVU1790at 1855.098 kb on + strand, within DVU1790at 1855.324 kb on + strand, within DVU1790at 1855.357 kb on - strand, within DVU1790at 1855.359 kb on + strand, within DVU1790at 1855.387 kb on + strand, within DVU1790at 1855.388 kb on - strand, within DVU1790at 1855.438 kb on + strand, within DVU1790at 1855.443 kb on - strand, within DVU1790

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Per-strain Table

Position Strand Gene LocusTag Fraction MoLS4 with TEMED 20mM (N)
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1,854,471 - -0.1
1,854,491 + -0.3
1,854,636 - +0.1
1,854,696 + -0.1
1,854,742 + -0.6
1,854,807 - DVU1790 0.12 -0.1
1,854,847 + DVU1790 0.14 +0.5
1,854,897 - DVU1790 0.16 -0.4
1,854,907 - DVU1790 0.17 -0.9
1,855,098 + DVU1790 0.25 -0.1
1,855,324 + DVU1790 0.35 +0.4
1,855,357 - DVU1790 0.36 +0.0
1,855,359 + DVU1790 0.36 +0.9
1,855,387 + DVU1790 0.38 -0.1
1,855,388 - DVU1790 0.38 +0.2
1,855,438 + DVU1790 0.40 +1.4
1,855,443 - DVU1790 0.40 -0.7

Or see this region's nucleotide sequence