Strain Fitness in Desulfovibrio vulgaris Hildenborough JW710 around DVU1284

Experiment: MoLS4 with TEMED 20mM (N)

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntglmM and galU are separated by 37 nucleotidesgalU and priA are separated by 75 nucleotidespriA and DORF34036 are separated by 5 nucleotidesDORF34036 and DVU1285 are separated by 67 nucleotidesDVU1285 and DsrP are separated by 187 nucleotides DVU1282: glmM - phosphoglucosamine mutase (TIGR), at 1,374,532 to 1,375,884 glmM DVU1283: galU - UTP-glucose-1-phosphate uridylyltransferase (TIGR), at 1,375,922 to 1,376,800 galU DVU1284: priA - primosomal protein n (TIGR), at 1,376,876 to 1,379,254 priA DORF34036: DORF34036 - no description, at 1,379,260 to 1,379,436 DORF34036 DVU1285: DVU1285 - response regulator (TIGR), at 1,379,504 to 1,379,896 DVU1285 DVU1286: DsrP - Integral membrane protein (Shelley Haveman), at 1,380,084 to 1,381,247 DsrP Position (kb) 1376 1377 1378 1379 1380Strain fitness (log2 ratio) -2 -1 0 1at 1375.886 kb on + strandat 1375.926 kb on - strandat 1375.961 kb on + strandat 1376.137 kb on + strand, within galUat 1376.380 kb on + strand, within galUat 1376.524 kb on - strand, within galUat 1376.643 kb on + strand, within galUat 1376.788 kb on - strandat 1376.833 kb on + strandat 1379.403 kb on - strand, within DORF34036at 1379.493 kb on - strandat 1379.598 kb on - strand, within DVU1285at 1379.721 kb on - strand, within DVU1285at 1379.831 kb on + strand, within DVU1285at 1379.997 kb on - strand

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction MoLS4 with TEMED 20mM (N)
remove
1,375,886 + -1.4
1,375,926 - -2.0
1,375,961 + -0.5
1,376,137 + galU DVU1283 0.24 -0.5
1,376,380 + galU DVU1283 0.52 +0.2
1,376,524 - galU DVU1283 0.68 -0.3
1,376,643 + galU DVU1283 0.82 -1.0
1,376,788 - +0.1
1,376,833 + -1.2
1,379,403 - DORF34036 0.81 -2.0
1,379,493 - +0.4
1,379,598 - DVU1285 0.24 -0.7
1,379,721 - DVU1285 0.55 -1.1
1,379,831 + DVU1285 0.83 -0.2
1,379,997 - -0.4

Or see this region's nucleotide sequence