Experiment: MoLS4 with TEMED 10mM (N)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt DVUA0099 and DORF807 overlap by 13 nucleotides DORF807 and flrC overlap by 4 nucleotides flrC and flhB are separated by 47 nucleotides
DVUA0099: DVUA0099 - HAMP domain protein (TIGR), at 133,570 to 135,753
DVUA0099
DORF807: DORF807 - no description, at 135,741 to 136,115
DORF807
DVUA0100: flrC - sigma-54 dependent transcriptional regulator (TIGR), at 136,112 to 137,839
flrC
DVUA0101: flhB - type III secretion protein, hrpY/hrcU family (TIGR), at 137,887 to 138,927
flhB
Position (kb) 136
137
138 Strain fitness (log2 ratio) -2
-1
0
1
2
3 at 135.229 kb on + strand, within DVUA0099 at 135.341 kb on + strand, within DVUA0099 at 135.344 kb on - strand, within DVUA0099 at 135.351 kb on + strand, within DVUA0099 at 135.356 kb on + strand, within DVUA0099 at 135.500 kb on - strand, within DVUA0099 at 135.561 kb on + strand at 135.569 kb on - strand at 135.635 kb on + strand at 135.643 kb on - strand at 135.734 kb on + strand at 135.762 kb on - strand at 135.849 kb on - strand, within DORF807 at 135.924 kb on + strand, within DORF807 at 135.932 kb on - strand, within DORF807 at 135.998 kb on - strand, within DORF807 at 136.048 kb on - strand, within DORF807 at 136.064 kb on - strand, within DORF807 at 136.066 kb on + strand, within DORF807 at 136.092 kb on - strand at 136.092 kb on - strand at 136.110 kb on + strand at 136.368 kb on + strand, within flrC at 136.416 kb on + strand, within flrC at 136.437 kb on + strand, within flrC at 136.478 kb on - strand, within flrC at 136.540 kb on - strand, within flrC at 136.557 kb on + strand, within flrC at 136.633 kb on + strand, within flrC at 136.638 kb on - strand, within flrC at 136.638 kb on - strand, within flrC at 136.652 kb on - strand, within flrC at 136.674 kb on + strand, within flrC at 136.868 kb on + strand, within flrC at 136.912 kb on + strand, within flrC at 136.958 kb on - strand, within flrC at 137.015 kb on - strand, within flrC at 137.144 kb on + strand, within flrC at 137.151 kb on + strand, within flrC at 137.161 kb on + strand, within flrC at 137.166 kb on + strand, within flrC at 137.188 kb on + strand, within flrC at 137.382 kb on + strand, within flrC at 137.397 kb on + strand, within flrC at 137.477 kb on + strand, within flrC at 137.572 kb on - strand, within flrC at 137.651 kb on - strand, within flrC at 137.653 kb on + strand, within flrC at 137.661 kb on - strand, within flrC at 137.692 kb on - strand at 137.715 kb on + strand at 137.841 kb on - strand at 137.885 kb on + strand at 137.912 kb on - strand at 137.922 kb on - strand at 138.101 kb on - strand, within flhB at 138.106 kb on - strand, within flhB at 138.148 kb on - strand, within flhB at 138.263 kb on + strand, within flhB at 138.270 kb on + strand, within flhB at 138.271 kb on - strand, within flhB at 138.315 kb on + strand, within flhB at 138.323 kb on - strand, within flhB at 138.341 kb on + strand, within flhB at 138.403 kb on - strand, within flhB at 138.408 kb on + strand, within flhB at 138.458 kb on - strand, within flhB at 138.575 kb on + strand, within flhB at 138.599 kb on - strand, within flhB at 138.622 kb on - strand, within flhB
Per-strain Table
Position Strand Gene LocusTag Fraction MoLS4 with TEMED 10mM (N) remove 135,229 + DVUA0099 0.76 +0.9 135,341 + DVUA0099 0.81 -0.9 135,344 - DVUA0099 0.81 -1.4 135,351 + DVUA0099 0.82 +0.8 135,356 + DVUA0099 0.82 -0.2 135,500 - DVUA0099 0.88 +0.1 135,561 + -0.4 135,569 - +1.7 135,635 + +0.3 135,643 - +0.5 135,734 + -0.0 135,762 - +0.4 135,849 - DORF807 0.29 +1.0 135,924 + DORF807 0.49 +0.8 135,932 - DORF807 0.51 -1.7 135,998 - DORF807 0.69 -0.4 136,048 - DORF807 0.82 -0.4 136,064 - DORF807 0.86 +0.6 136,066 + DORF807 0.87 -0.6 136,092 - +1.4 136,092 - -0.6 136,110 + -0.5 136,368 + flrC DVUA0100 0.15 -0.0 136,416 + flrC DVUA0100 0.18 +0.4 136,437 + flrC DVUA0100 0.19 +0.6 136,478 - flrC DVUA0100 0.21 -0.2 136,540 - flrC DVUA0100 0.25 +0.3 136,557 + flrC DVUA0100 0.26 -0.0 136,633 + flrC DVUA0100 0.30 +0.7 136,638 - flrC DVUA0100 0.30 -0.3 136,638 - flrC DVUA0100 0.30 +0.0 136,652 - flrC DVUA0100 0.31 -0.1 136,674 + flrC DVUA0100 0.33 -1.9 136,868 + flrC DVUA0100 0.44 +0.8 136,912 + flrC DVUA0100 0.46 +0.5 136,958 - flrC DVUA0100 0.49 +3.7 137,015 - flrC DVUA0100 0.52 +0.6 137,144 + flrC DVUA0100 0.60 +1.2 137,151 + flrC DVUA0100 0.60 +0.6 137,161 + flrC DVUA0100 0.61 +0.2 137,166 + flrC DVUA0100 0.61 +0.4 137,188 + flrC DVUA0100 0.62 +0.2 137,382 + flrC DVUA0100 0.73 -0.2 137,397 + flrC DVUA0100 0.74 +0.8 137,477 + flrC DVUA0100 0.79 +0.0 137,572 - flrC DVUA0100 0.84 -0.3 137,651 - flrC DVUA0100 0.89 -0.1 137,653 + flrC DVUA0100 0.89 +0.2 137,661 - flrC DVUA0100 0.90 -0.5 137,692 - +0.3 137,715 + -2.3 137,841 - -1.0 137,885 + +1.0 137,912 - -0.0 137,922 - -0.2 138,101 - flhB DVUA0101 0.21 +0.0 138,106 - flhB DVUA0101 0.21 +0.0 138,148 - flhB DVUA0101 0.25 +0.4 138,263 + flhB DVUA0101 0.36 +0.6 138,270 + flhB DVUA0101 0.37 +0.1 138,271 - flhB DVUA0101 0.37 -0.0 138,315 + flhB DVUA0101 0.41 +0.0 138,323 - flhB DVUA0101 0.42 -0.5 138,341 + flhB DVUA0101 0.44 -0.2 138,403 - flhB DVUA0101 0.50 -0.1 138,408 + flhB DVUA0101 0.50 +1.4 138,458 - flhB DVUA0101 0.55 +0.8 138,575 + flhB DVUA0101 0.66 -1.7 138,599 - flhB DVUA0101 0.68 +0.4 138,622 - flhB DVUA0101 0.71 -0.9
Or see this region's nucleotide sequence