Experiment: Ferric citrate electron acceptor; flight; DNA cleaned with chelator
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt SO4032 and deaD are separated by 196 nucleotides deaD and SO4035 are separated by 186 nucleotides SO4035 and SO4036 are separated by 141 nucleotides
SO4032: SO4032 - conserved hypothetical protein (NCBI ptt file), at 4,188,337 to 4,189,380
SO4032
SO4034: deaD - ATP-dependent RNA helicase DeaD (NCBI ptt file), at 4,189,577 to 4,191,448
deaD
SO4035: SO4035 - hypothetical protein (NCBI ptt file), at 4,191,635 to 4,191,994
SO4035
SO4036: SO4036 - hypothetical protein (NCBI ptt file), at 4,192,136 to 4,192,666
SO4036
Position (kb)
4189
4190
4191
4192 Strain fitness (log2 ratio)
-3
-2
-1
0
1 at 4188.590 kb on - strand, within SO4032 at 4188.719 kb on + strand, within SO4032 at 4188.727 kb on - strand, within SO4032 at 4188.827 kb on + strand, within SO4032 at 4188.828 kb on + strand, within SO4032 at 4188.910 kb on + strand, within SO4032 at 4188.940 kb on - strand, within SO4032 at 4188.959 kb on - strand, within SO4032 at 4189.058 kb on - strand, within SO4032 at 4189.136 kb on + strand, within SO4032 at 4189.160 kb on - strand, within SO4032 at 4189.160 kb on - strand, within SO4032 at 4189.172 kb on - strand, within SO4032 at 4189.191 kb on + strand, within SO4032 at 4189.232 kb on + strand, within SO4032 at 4189.232 kb on - strand, within SO4032 at 4189.279 kb on + strand at 4189.355 kb on - strand at 4189.691 kb on - strand at 4189.739 kb on + strand at 4189.752 kb on + strand at 4189.760 kb on - strand at 4189.914 kb on + strand, within deaD at 4190.103 kb on + strand, within deaD at 4190.393 kb on + strand, within deaD at 4190.401 kb on - strand, within deaD at 4190.518 kb on - strand, within deaD at 4190.678 kb on - strand, within deaD at 4190.697 kb on + strand, within deaD at 4190.848 kb on + strand, within deaD at 4190.923 kb on + strand, within deaD at 4190.934 kb on + strand, within deaD at 4191.014 kb on - strand, within deaD at 4191.083 kb on + strand, within deaD at 4191.091 kb on - strand, within deaD at 4191.217 kb on + strand, within deaD at 4191.217 kb on + strand, within deaD at 4191.320 kb on + strand at 4191.457 kb on + strand at 4191.463 kb on + strand at 4191.463 kb on + strand at 4191.463 kb on + strand at 4191.463 kb on + strand at 4191.606 kb on + strand at 4191.750 kb on + strand, within SO4035 at 4191.750 kb on + strand, within SO4035 at 4191.758 kb on - strand, within SO4035 at 4191.758 kb on - strand, within SO4035 at 4191.874 kb on - strand, within SO4035 at 4191.896 kb on - strand, within SO4035 at 4191.898 kb on + strand, within SO4035 at 4191.906 kb on - strand, within SO4035 at 4191.972 kb on - strand at 4192.107 kb on + strand at 4192.109 kb on + strand at 4192.318 kb on + strand, within SO4036 at 4192.430 kb on - strand, within SO4036
Per-strain Table
Position Strand Gene LocusTag Fraction Ferric citrate electron acceptor; flight; DNA cleaned with chelator remove 4,188,590 - SO4032 0.24 -0.3 4,188,719 + SO4032 0.37 -0.1 4,188,727 - SO4032 0.37 +0.9 4,188,827 + SO4032 0.47 -2.4 4,188,828 + SO4032 0.47 -0.5 4,188,910 + SO4032 0.55 +0.1 4,188,940 - SO4032 0.58 -1.5 4,188,959 - SO4032 0.60 -2.9 4,189,058 - SO4032 0.69 +0.2 4,189,136 + SO4032 0.77 +0.2 4,189,160 - SO4032 0.79 +1.5 4,189,160 - SO4032 0.79 +0.7 4,189,172 - SO4032 0.80 -0.9 4,189,191 + SO4032 0.82 -1.3 4,189,232 + SO4032 0.86 -2.6 4,189,232 - SO4032 0.86 +0.1 4,189,279 + -1.6 4,189,355 - +0.1 4,189,691 - -0.6 4,189,739 + -1.5 4,189,752 + +0.9 4,189,760 - +1.3 4,189,914 + deaD SO4034 0.18 -1.8 4,190,103 + deaD SO4034 0.28 +0.0 4,190,393 + deaD SO4034 0.44 -1.7 4,190,401 - deaD SO4034 0.44 -2.4 4,190,518 - deaD SO4034 0.50 -1.8 4,190,678 - deaD SO4034 0.59 -0.6 4,190,697 + deaD SO4034 0.60 -0.3 4,190,848 + deaD SO4034 0.68 -0.8 4,190,923 + deaD SO4034 0.72 -2.0 4,190,934 + deaD SO4034 0.72 +0.0 4,191,014 - deaD SO4034 0.77 +0.8 4,191,083 + deaD SO4034 0.80 -1.0 4,191,091 - deaD SO4034 0.81 -0.5 4,191,217 + deaD SO4034 0.88 -2.9 4,191,217 + deaD SO4034 0.88 -0.6 4,191,320 + +1.0 4,191,457 + +0.4 4,191,463 + -1.1 4,191,463 + -0.1 4,191,463 + +1.1 4,191,463 + +1.0 4,191,606 + -0.2 4,191,750 + SO4035 0.32 -0.7 4,191,750 + SO4035 0.32 +1.7 4,191,758 - SO4035 0.34 +0.9 4,191,758 - SO4035 0.34 -0.5 4,191,874 - SO4035 0.66 -0.8 4,191,896 - SO4035 0.72 -1.5 4,191,898 + SO4035 0.73 +1.5 4,191,906 - SO4035 0.75 -2.5 4,191,972 - -0.8 4,192,107 + +0.1 4,192,109 + +0.2 4,192,318 + SO4036 0.34 +1.1 4,192,430 - SO4036 0.55 -0.4
Or see this region's nucleotide sequence