Strain Fitness in Shewanella oneidensis MR-1 around SO2869

Experiment: Ferric citrate electron acceptor; flight; DNA cleaned with chelator

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntSO2867 and SO2868 are separated by 200 nucleotidesSO2868 and SO2869 are separated by 112 nucleotidesSO2869 and SO2871 are separated by 114 nucleotidesSO2871 and SO2872 are separated by 52 nucleotides SO2867: SO2867 - permease PerM, putative (NCBI ptt file), at 2,989,986 to 2,991,071 SO2867 SO2868: SO2868 - conserved hypothetical protein (NCBI ptt file), at 2,991,272 to 2,991,505 SO2868 SO2869: SO2869 - conserved hypothetical protein (NCBI ptt file), at 2,991,618 to 2,993,087 SO2869 SO2871: SO2871 - arsenate reductase, putative (NCBI ptt file), at 2,993,202 to 2,993,570 SO2871 SO2872: SO2872 - conserved hypothetical protein (NCBI ptt file), at 2,993,623 to 2,993,997 SO2872 Position (kb) 2991 2992 2993 2994Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3at 2990.685 kb on - strand, within SO2867at 2990.687 kb on + strand, within SO2867at 2990.687 kb on + strand, within SO2867at 2990.695 kb on - strand, within SO2867at 2990.724 kb on + strand, within SO2867at 2990.777 kb on + strand, within SO2867at 2990.786 kb on - strand, within SO2867at 2990.810 kb on + strand, within SO2867at 2990.810 kb on + strand, within SO2867at 2990.810 kb on + strand, within SO2867at 2990.810 kb on + strand, within SO2867at 2990.810 kb on + strand, within SO2867at 2990.810 kb on + strand, within SO2867at 2990.810 kb on + strand, within SO2867at 2990.818 kb on - strand, within SO2867at 2990.818 kb on - strand, within SO2867at 2990.818 kb on - strand, within SO2867at 2990.818 kb on - strand, within SO2867at 2990.818 kb on - strand, within SO2867at 2990.818 kb on - strand, within SO2867at 2990.985 kb on + strandat 2990.992 kb on - strandat 2991.012 kb on + strandat 2991.019 kb on + strandat 2991.120 kb on + strandat 2991.121 kb on + strandat 2991.146 kb on + strandat 2991.146 kb on + strandat 2991.231 kb on + strandat 2991.248 kb on + strandat 2991.307 kb on + strand, within SO2868at 2991.315 kb on - strand, within SO2868at 2991.315 kb on - strand, within SO2868at 2991.429 kb on + strand, within SO2868at 2991.437 kb on - strand, within SO2868at 2991.437 kb on - strand, within SO2868at 2991.453 kb on + strand, within SO2868at 2991.610 kb on + strandat 2991.794 kb on - strand, within SO2869at 2991.829 kb on + strand, within SO2869at 2991.837 kb on - strand, within SO2869at 2991.974 kb on - strand, within SO2869at 2992.070 kb on - strand, within SO2869at 2992.110 kb on + strand, within SO2869at 2992.118 kb on - strand, within SO2869at 2992.397 kb on - strand, within SO2869at 2992.418 kb on + strand, within SO2869at 2992.495 kb on + strand, within SO2869at 2992.508 kb on - strand, within SO2869at 2992.543 kb on + strand, within SO2869at 2992.543 kb on + strand, within SO2869at 2992.551 kb on - strand, within SO2869at 2992.685 kb on - strand, within SO2869at 2992.903 kb on + strand, within SO2869at 2992.935 kb on - strand, within SO2869at 2992.963 kb on - strandat 2993.218 kb on - strandat 2993.280 kb on - strand, within SO2871at 2993.308 kb on - strand, within SO2871at 2993.311 kb on - strand, within SO2871at 2993.343 kb on + strand, within SO2871at 2993.414 kb on - strand, within SO2871at 2993.427 kb on + strand, within SO2871at 2993.445 kb on - strand, within SO2871at 2993.445 kb on - strand, within SO2871at 2993.445 kb on - strand, within SO2871at 2993.638 kb on + strandat 2993.677 kb on - strand, within SO2872at 2993.794 kb on + strand, within SO2872at 2993.910 kb on - strand, within SO2872

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Per-strain Table

Position Strand Gene LocusTag Fraction Ferric citrate electron acceptor; flight; DNA cleaned with chelator
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2,990,685 - SO2867 0.64 -1.9
2,990,687 + SO2867 0.65 +0.2
2,990,687 + SO2867 0.65 -1.5
2,990,695 - SO2867 0.65 -0.6
2,990,724 + SO2867 0.68 -1.8
2,990,777 + SO2867 0.73 +0.8
2,990,786 - SO2867 0.74 -2.8
2,990,810 + SO2867 0.76 +1.2
2,990,810 + SO2867 0.76 -1.1
2,990,810 + SO2867 0.76 +1.4
2,990,810 + SO2867 0.76 +2.1
2,990,810 + SO2867 0.76 -2.5
2,990,810 + SO2867 0.76 -1.5
2,990,810 + SO2867 0.76 -0.1
2,990,818 - SO2867 0.77 -1.4
2,990,818 - SO2867 0.77 -0.1
2,990,818 - SO2867 0.77 -0.4
2,990,818 - SO2867 0.77 -0.9
2,990,818 - SO2867 0.77 +0.3
2,990,818 - SO2867 0.77 -1.3
2,990,985 + +1.0
2,990,992 - -0.5
2,991,012 + +0.7
2,991,019 + -0.3
2,991,120 + -0.6
2,991,121 + +0.9
2,991,146 + -0.3
2,991,146 + -1.8
2,991,231 + +1.8
2,991,248 + -1.2
2,991,307 + SO2868 0.15 +1.4
2,991,315 - SO2868 0.18 +2.1
2,991,315 - SO2868 0.18 +1.9
2,991,429 + SO2868 0.67 +2.2
2,991,437 - SO2868 0.71 +1.8
2,991,437 - SO2868 0.71 +1.4
2,991,453 + SO2868 0.77 +1.2
2,991,610 + -2.1
2,991,794 - SO2869 0.12 -2.4
2,991,829 + SO2869 0.14 -2.5
2,991,837 - SO2869 0.15 -1.3
2,991,974 - SO2869 0.24 -3.0
2,992,070 - SO2869 0.31 -2.4
2,992,110 + SO2869 0.33 -0.9
2,992,118 - SO2869 0.34 -0.1
2,992,397 - SO2869 0.53 +1.0
2,992,418 + SO2869 0.54 -2.5
2,992,495 + SO2869 0.60 -0.7
2,992,508 - SO2869 0.61 +0.3
2,992,543 + SO2869 0.63 -0.5
2,992,543 + SO2869 0.63 -1.1
2,992,551 - SO2869 0.63 -1.0
2,992,685 - SO2869 0.73 -1.3
2,992,903 + SO2869 0.87 -3.0
2,992,935 - SO2869 0.90 -1.1
2,992,963 - +3.6
2,993,218 - -1.5
2,993,280 - SO2871 0.21 -0.3
2,993,308 - SO2871 0.29 +0.4
2,993,311 - SO2871 0.30 +2.5
2,993,343 + SO2871 0.38 +0.3
2,993,414 - SO2871 0.57 -0.9
2,993,427 + SO2871 0.61 -0.7
2,993,445 - SO2871 0.66 -0.1
2,993,445 - SO2871 0.66 +0.8
2,993,445 - SO2871 0.66 +0.1
2,993,638 + -1.7
2,993,677 - SO2872 0.14 +0.6
2,993,794 + SO2872 0.46 -1.3
2,993,910 - SO2872 0.77 -2.0

Or see this region's nucleotide sequence