Experiment: Ferric citrate electron acceptor; flight; DNA cleaned with chelator
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt SO2867 and SO2868 are separated by 200 nucleotides SO2868 and SO2869 are separated by 112 nucleotides SO2869 and SO2871 are separated by 114 nucleotides SO2871 and SO2872 are separated by 52 nucleotides
SO2867: SO2867 - permease PerM, putative (NCBI ptt file), at 2,989,986 to 2,991,071
SO2867
SO2868: SO2868 - conserved hypothetical protein (NCBI ptt file), at 2,991,272 to 2,991,505
SO2868
SO2869: SO2869 - conserved hypothetical protein (NCBI ptt file), at 2,991,618 to 2,993,087
SO2869
SO2871: SO2871 - arsenate reductase, putative (NCBI ptt file), at 2,993,202 to 2,993,570
SO2871
SO2872: SO2872 - conserved hypothetical protein (NCBI ptt file), at 2,993,623 to 2,993,997
SO2872
Position (kb)
2991
2992
2993
2994 Strain fitness (log2 ratio)
-3
-2
-1
0
1
2
3 at 2990.685 kb on - strand, within SO2867 at 2990.687 kb on + strand, within SO2867 at 2990.687 kb on + strand, within SO2867 at 2990.695 kb on - strand, within SO2867 at 2990.724 kb on + strand, within SO2867 at 2990.777 kb on + strand, within SO2867 at 2990.786 kb on - strand, within SO2867 at 2990.810 kb on + strand, within SO2867 at 2990.810 kb on + strand, within SO2867 at 2990.810 kb on + strand, within SO2867 at 2990.810 kb on + strand, within SO2867 at 2990.810 kb on + strand, within SO2867 at 2990.810 kb on + strand, within SO2867 at 2990.810 kb on + strand, within SO2867 at 2990.818 kb on - strand, within SO2867 at 2990.818 kb on - strand, within SO2867 at 2990.818 kb on - strand, within SO2867 at 2990.818 kb on - strand, within SO2867 at 2990.818 kb on - strand, within SO2867 at 2990.818 kb on - strand, within SO2867 at 2990.985 kb on + strand at 2990.992 kb on - strand at 2991.012 kb on + strand at 2991.019 kb on + strand at 2991.120 kb on + strand at 2991.121 kb on + strand at 2991.146 kb on + strand at 2991.146 kb on + strand at 2991.231 kb on + strand at 2991.248 kb on + strand at 2991.307 kb on + strand, within SO2868 at 2991.315 kb on - strand, within SO2868 at 2991.315 kb on - strand, within SO2868 at 2991.429 kb on + strand, within SO2868 at 2991.437 kb on - strand, within SO2868 at 2991.437 kb on - strand, within SO2868 at 2991.453 kb on + strand, within SO2868 at 2991.610 kb on + strand at 2991.794 kb on - strand, within SO2869 at 2991.829 kb on + strand, within SO2869 at 2991.837 kb on - strand, within SO2869 at 2991.974 kb on - strand, within SO2869 at 2992.070 kb on - strand, within SO2869 at 2992.110 kb on + strand, within SO2869 at 2992.118 kb on - strand, within SO2869 at 2992.397 kb on - strand, within SO2869 at 2992.418 kb on + strand, within SO2869 at 2992.495 kb on + strand, within SO2869 at 2992.508 kb on - strand, within SO2869 at 2992.543 kb on + strand, within SO2869 at 2992.543 kb on + strand, within SO2869 at 2992.551 kb on - strand, within SO2869 at 2992.685 kb on - strand, within SO2869 at 2992.903 kb on + strand, within SO2869 at 2992.935 kb on - strand, within SO2869 at 2992.963 kb on - strand at 2993.218 kb on - strand at 2993.280 kb on - strand, within SO2871 at 2993.308 kb on - strand, within SO2871 at 2993.311 kb on - strand, within SO2871 at 2993.343 kb on + strand, within SO2871 at 2993.414 kb on - strand, within SO2871 at 2993.427 kb on + strand, within SO2871 at 2993.445 kb on - strand, within SO2871 at 2993.445 kb on - strand, within SO2871 at 2993.445 kb on - strand, within SO2871 at 2993.638 kb on + strand at 2993.677 kb on - strand, within SO2872 at 2993.794 kb on + strand, within SO2872 at 2993.910 kb on - strand, within SO2872
Per-strain Table
Position Strand Gene LocusTag Fraction Ferric citrate electron acceptor; flight; DNA cleaned with chelator remove 2,990,685 - SO2867 0.64 -1.9 2,990,687 + SO2867 0.65 +0.2 2,990,687 + SO2867 0.65 -1.5 2,990,695 - SO2867 0.65 -0.6 2,990,724 + SO2867 0.68 -1.8 2,990,777 + SO2867 0.73 +0.8 2,990,786 - SO2867 0.74 -2.8 2,990,810 + SO2867 0.76 +1.2 2,990,810 + SO2867 0.76 -1.1 2,990,810 + SO2867 0.76 +1.4 2,990,810 + SO2867 0.76 +2.1 2,990,810 + SO2867 0.76 -2.5 2,990,810 + SO2867 0.76 -1.5 2,990,810 + SO2867 0.76 -0.1 2,990,818 - SO2867 0.77 -1.4 2,990,818 - SO2867 0.77 -0.1 2,990,818 - SO2867 0.77 -0.4 2,990,818 - SO2867 0.77 -0.9 2,990,818 - SO2867 0.77 +0.3 2,990,818 - SO2867 0.77 -1.3 2,990,985 + +1.0 2,990,992 - -0.5 2,991,012 + +0.7 2,991,019 + -0.3 2,991,120 + -0.6 2,991,121 + +0.9 2,991,146 + -0.3 2,991,146 + -1.8 2,991,231 + +1.8 2,991,248 + -1.2 2,991,307 + SO2868 0.15 +1.4 2,991,315 - SO2868 0.18 +2.1 2,991,315 - SO2868 0.18 +1.9 2,991,429 + SO2868 0.67 +2.2 2,991,437 - SO2868 0.71 +1.8 2,991,437 - SO2868 0.71 +1.4 2,991,453 + SO2868 0.77 +1.2 2,991,610 + -2.1 2,991,794 - SO2869 0.12 -2.4 2,991,829 + SO2869 0.14 -2.5 2,991,837 - SO2869 0.15 -1.3 2,991,974 - SO2869 0.24 -3.0 2,992,070 - SO2869 0.31 -2.4 2,992,110 + SO2869 0.33 -0.9 2,992,118 - SO2869 0.34 -0.1 2,992,397 - SO2869 0.53 +1.0 2,992,418 + SO2869 0.54 -2.5 2,992,495 + SO2869 0.60 -0.7 2,992,508 - SO2869 0.61 +0.3 2,992,543 + SO2869 0.63 -0.5 2,992,543 + SO2869 0.63 -1.1 2,992,551 - SO2869 0.63 -1.0 2,992,685 - SO2869 0.73 -1.3 2,992,903 + SO2869 0.87 -3.0 2,992,935 - SO2869 0.90 -1.1 2,992,963 - +3.6 2,993,218 - -1.5 2,993,280 - SO2871 0.21 -0.3 2,993,308 - SO2871 0.29 +0.4 2,993,311 - SO2871 0.30 +2.5 2,993,343 + SO2871 0.38 +0.3 2,993,414 - SO2871 0.57 -0.9 2,993,427 + SO2871 0.61 -0.7 2,993,445 - SO2871 0.66 -0.1 2,993,445 - SO2871 0.66 +0.8 2,993,445 - SO2871 0.66 +0.1 2,993,638 + -1.7 2,993,677 - SO2872 0.14 +0.6 2,993,794 + SO2872 0.46 -1.3 2,993,910 - SO2872 0.77 -2.0
Or see this region's nucleotide sequence