Experiment: Ferric citrate electron acceptor; flight; DNA cleaned with chelator
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt SO2766 and asnB-1 are separated by 472 nucleotides asnB-1 and SO2768 are separated by 73 nucleotides
SO2766: SO2766 - conserved hypothetical protein (NCBI ptt file), at 2,887,277 to 2,888,845
SO2766
SO2767: asnB-1 - asparagine synthetase B, glutamine-hydrolyzing (NCBI ptt file), at 2,889,318 to 2,890,982
asnB-1
SO2768: SO2768 - acyl-CoA dehydrogenase family protein (NCBI ptt file), at 2,891,056 to 2,892,846
SO2768
Position (kb)
2889
2890
2891 Strain fitness (log2 ratio)
-4
-3
-2
-1
0
1
2
3 at 2888.623 kb on + strand, within SO2766 at 2888.661 kb on + strand, within SO2766 at 2888.893 kb on + strand at 2888.966 kb on + strand at 2889.302 kb on + strand at 2889.526 kb on - strand, within asnB-1 at 2889.790 kb on - strand, within asnB-1 at 2889.821 kb on + strand, within asnB-1 at 2889.829 kb on - strand, within asnB-1 at 2890.009 kb on + strand, within asnB-1 at 2890.009 kb on + strand, within asnB-1 at 2890.019 kb on - strand, within asnB-1 at 2890.124 kb on - strand, within asnB-1 at 2890.124 kb on - strand, within asnB-1 at 2890.353 kb on - strand, within asnB-1 at 2890.683 kb on + strand, within asnB-1 at 2890.829 kb on + strand at 2891.004 kb on - strand at 2891.118 kb on + strand at 2891.125 kb on + strand at 2891.125 kb on + strand at 2891.126 kb on - strand at 2891.143 kb on - strand at 2891.274 kb on + strand, within SO2768 at 2891.282 kb on - strand, within SO2768 at 2891.378 kb on + strand, within SO2768 at 2891.442 kb on + strand, within SO2768 at 2891.450 kb on - strand, within SO2768 at 2891.450 kb on - strand, within SO2768 at 2891.450 kb on - strand, within SO2768 at 2891.492 kb on - strand at 2891.492 kb on - strand, within SO2768 at 2891.492 kb on - strand, within SO2768 at 2891.647 kb on + strand, within SO2768 at 2891.674 kb on - strand, within SO2768 at 2891.740 kb on + strand, within SO2768 at 2891.755 kb on + strand, within SO2768 at 2891.763 kb on - strand, within SO2768 at 2891.814 kb on + strand, within SO2768 at 2891.878 kb on + strand, within SO2768 at 2891.878 kb on + strand, within SO2768 at 2891.942 kb on - strand, within SO2768 at 2891.952 kb on - strand, within SO2768
Per-strain Table
Position Strand Gene LocusTag Fraction Ferric citrate electron acceptor; flight; DNA cleaned with chelator remove 2,888,623 + SO2766 0.86 -0.2 2,888,661 + SO2766 0.88 -1.3 2,888,893 + -0.5 2,888,966 + -3.1 2,889,302 + -1.7 2,889,526 - asnB-1 SO2767 0.12 -2.3 2,889,790 - asnB-1 SO2767 0.28 -2.7 2,889,821 + asnB-1 SO2767 0.30 -4.2 2,889,829 - asnB-1 SO2767 0.31 -2.6 2,890,009 + asnB-1 SO2767 0.42 -1.5 2,890,009 + asnB-1 SO2767 0.42 -2.0 2,890,019 - asnB-1 SO2767 0.42 -1.9 2,890,124 - asnB-1 SO2767 0.48 -1.3 2,890,124 - asnB-1 SO2767 0.48 -2.3 2,890,353 - asnB-1 SO2767 0.62 -1.8 2,890,683 + asnB-1 SO2767 0.82 -1.8 2,890,829 + -3.3 2,891,004 - -3.0 2,891,118 + -0.9 2,891,125 + +0.4 2,891,125 + -1.7 2,891,126 - -2.6 2,891,143 - +0.3 2,891,274 + SO2768 0.12 +1.2 2,891,282 - SO2768 0.13 -1.5 2,891,378 + SO2768 0.18 +0.5 2,891,442 + SO2768 0.22 +0.0 2,891,450 - SO2768 0.22 +0.7 2,891,450 - SO2768 0.22 -0.7 2,891,450 - SO2768 0.22 -0.6 2,891,492 - +2.2 2,891,492 - SO2768 0.24 +0.7 2,891,492 - SO2768 0.24 -0.4 2,891,647 + SO2768 0.33 +0.3 2,891,674 - SO2768 0.35 +0.5 2,891,740 + SO2768 0.38 -0.6 2,891,755 + SO2768 0.39 -1.3 2,891,763 - SO2768 0.39 +0.1 2,891,814 + SO2768 0.42 -1.4 2,891,878 + SO2768 0.46 -0.7 2,891,878 + SO2768 0.46 +0.1 2,891,942 - SO2768 0.49 +1.9 2,891,952 - SO2768 0.50 +2.8
Or see this region's nucleotide sequence