Strain Fitness in Shewanella oneidensis MR-1 around SO1955

Experiment: Ferric citrate electron acceptor; flight; DNA cleaned with chelator

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Ferric citrate electron acceptor; flight; DNA cleaned with chelator
2,061,170	+		SO1954	0.20	-0.3
2,061,170	+		SO1954	0.20	-1.5
2,061,170	+		SO1954	0.20	-2.0
2,061,170	+		SO1954	0.20	+1.2
2,061,170	+		SO1954	0.20	-0.9
2,061,170	+		SO1954	0.20	+1.5
2,061,173	-		SO1954	0.21	+0.0
2,061,178	-		SO1954	0.21	-0.4
2,061,199	-		SO1954	0.25	+1.8
2,061,201	+		SO1954	0.25	+1.6
2,061,209	+		SO1954	0.26	+1.0
2,061,209	-		SO1954	0.26	+0.2
2,061,282	+		SO1954	0.38	-2.7
2,061,283	+		SO1954	0.38	-1.2
2,061,283	+		SO1954	0.38	+0.7
2,061,283	+		SO1954	0.38	-2.1
2,061,283	+		SO1954	0.38	-1.1
2,061,283	+		SO1954	0.38	-1.7
2,061,291	-		SO1954	0.39	+0.5
2,061,291	-		SO1954	0.39	+0.7
2,061,291	-		SO1954	0.39	+0.4
2,061,291	-		SO1954	0.39	+1.4
2,061,408	+		SO1954	0.58	+1.7
2,061,515	-		SO1954	0.75	-0.0
2,061,520	+		SO1954	0.76	+1.5
2,061,520	+		SO1954	0.76	-2.6
2,061,520	+		SO1954	0.76	-0.6
2,061,528	-		SO1954	0.77	+1.3
2,061,528	-		SO1954	0.77	-1.4
2,061,528	-		SO1954	0.77	-0.9
2,061,528	-		SO1954	0.77	-3.6
2,061,528	-		SO1954	0.77	+1.2
2,061,550	+		SO1954	0.81	+1.0
2,061,554	+		SO1954	0.82	-0.1
2,061,558	-		SO1954	0.82	+0.7
2,061,592	+		SO1954	0.88	+0.6
2,061,592	+		SO1954	0.88	-0.6
2,061,600	-		SO1954	0.89	-0.1
2,061,669	+				+0.9
2,061,677	-				+0.5
2,061,709	-				-2.8
2,061,748	+				+0.3
2,061,748	+				+0.3
2,061,786	+				+1.4
2,061,794	-				-2.6
2,061,804	-				-0.7
2,061,836	+				-0.2
2,061,960	+				+1.8
2,061,960	+				+1.3
2,061,960	+				-1.3
2,061,968	-				+1.4
2,061,968	-				-0.5
2,062,033	+		SO1955	0.17	+0.8
2,062,033	+		SO1955	0.17	+0.1
2,062,033	+		SO1955	0.17	+1.3
2,062,033	+		SO1955	0.17	-0.4
2,062,033	+		SO1955	0.17	+0.3
2,062,033	+		SO1955	0.17	-0.4
2,062,033	+		SO1955	0.17	+1.7
2,062,035	+		SO1955	0.18	-0.9
2,062,035	+		SO1955	0.18	-1.6
2,062,041	-		SO1955	0.19	+1.3
2,062,041	-		SO1955	0.19	+0.7
2,062,041	-		SO1955	0.19	+0.7
2,062,041	-		SO1955	0.19	+0.5
2,062,041	-		SO1955	0.19	+1.3
2,062,041	-		SO1955	0.19	+1.6
2,062,041	-		SO1955	0.19	-1.2
2,062,041	-		SO1955	0.19	+1.0
2,062,041	-		SO1955	0.19	-1.0
2,062,041	-		SO1955	0.19	+0.4
2,062,041	-		SO1955	0.19	+2.5
2,062,043	-		SO1955	0.20	-2.2
2,062,045	+		SO1955	0.20	+0.3
2,062,045	+		SO1955	0.20	-0.9
2,062,045	+		SO1955	0.20	+3.3
2,062,045	+		SO1955	0.20	-1.8
2,062,045	+		SO1955	0.20	-2.3
2,062,045	+		SO1955	0.20	+0.0
2,062,045	+		SO1955	0.20	-0.3
2,062,045	+		SO1955	0.20	+0.5
2,062,045	+		SO1955	0.20	-1.1
2,062,045	+		SO1955	0.20	+0.1
2,062,053	-		SO1955	0.22	-1.2
2,062,053	-		SO1955	0.22	-0.6
2,062,053	-		SO1955	0.22	-0.7
2,062,053	-		SO1955	0.22	-1.7
2,062,053	-		SO1955	0.22	-0.4
2,062,053	-		SO1955	0.22	+0.6
2,062,053	-		SO1955	0.22	-0.2
2,062,053	-		SO1955	0.22	-1.5
2,062,053	-		SO1955	0.22	+1.9
2,062,053	-		SO1955	0.22	-0.8
2,062,053	-		SO1955	0.22	+1.7
2,062,053	-		SO1955	0.22	+0.5
2,062,053	-		SO1955	0.22	-2.1
2,062,053	-		SO1955	0.22	-0.1
2,062,053	-		SO1955	0.22	-2.5
2,062,053	-		SO1955	0.22	-0.0
2,062,053	-		SO1955	0.22	+0.9
2,062,053	-		SO1955	0.22	+1.6
2,062,053	-		SO1955	0.22	-2.5
2,062,061	-		SO1955	0.24	-2.2
2,062,067	-		SO1955	0.25	-0.5
2,062,074	+		SO1955	0.26	-0.6
2,062,111	+		SO1955	0.35	+1.8
2,062,165	+		SO1955	0.47	+1.5
2,062,185	+		SO1955	0.51	+1.8
2,062,185	-		SO1955	0.51	-1.3
2,062,241	+		SO1955	0.63	-1.3
2,062,241	+		SO1955	0.63	+3.1
2,062,242	-		SO1955	0.64	-0.2
2,062,249	-		SO1955	0.65	-2.0
2,062,249	-		SO1955	0.65	-0.1
2,062,282	+		SO1955	0.72	-0.1
2,062,287	+		SO1955	0.74	+1.3
2,062,287	+		SO1955	0.74	+1.1
2,062,295	-		SO1955	0.75	+2.2
2,062,295	-		SO1955	0.75	-1.2
2,062,295	-		SO1955	0.75	-1.2
2,062,305	+		SO1955	0.77	-0.7
2,062,312	-		SO1955	0.79	-1.2
2,062,348	+		SO1955	0.87	+0.1
2,062,348	-		SO1955	0.87	+0.3
2,062,349	+		SO1955	0.87	+0.5
2,062,356	-		SO1955	0.89	-0.5
2,062,366	+				+1.3
2,062,366	+				+1.3
2,062,366	+				+0.4
2,062,369	-				+0.3
2,062,374	-				-0.4
2,062,374	-				+1.3
2,062,374	-				+0.4
2,062,374	-				-0.7
2,062,374	-				+2.2
2,062,374	-				+0.6
2,062,374	-				+0.8
2,062,385	+				+0.3
2,062,450	+				+0.8
2,062,450	+				-2.4
2,062,450	+				+2.1
2,062,450	+				-0.3
2,062,450	+				-1.4
2,062,450	+				+1.4
2,062,450	+				-0.4
2,062,450	+				-0.0
2,062,450	+				-0.6
2,062,458	-				-1.6
2,062,458	-				+0.8
2,062,458	-				+2.7
2,062,458	-				+1.2
2,062,458	-				+1.1
2,062,464	+				+0.5
2,062,466	+				-0.5
2,062,466	+				+0.6
2,062,466	+				+1.2
2,062,490	+				+0.2
2,062,518	-				-0.3
2,062,577	+				-0.5
2,062,588	+				-1.5
2,062,588	+				-0.1
2,062,592	+				+1.1
2,062,602	-				-2.7
2,062,608	+				+0.6
2,062,614	+				-1.2
2,062,615	+				+0.9
2,062,615	+				-1.5
2,062,615	+				-1.1
2,062,615	+				-0.6
2,062,615	+				+1.3
2,062,615	+				-0.0
2,062,615	+				-1.1
2,062,615	+				+0.4
2,062,615	+				-1.0
2,062,615	+				+1.1
2,062,615	+				-0.5
2,062,615	+				+0.8
2,062,615	+				+0.4
2,062,615	+				+0.8
2,062,615	+				+0.5
2,062,615	+				-0.1
2,062,615	+				+2.4
2,062,622	-				-0.7
2,062,622	-				+0.7
2,062,622	-				+1.0
2,062,622	-				-1.3
2,062,622	-				+2.3
2,062,622	-				+0.7
2,062,622	-				+1.4
2,062,622	-				-0.5
2,062,622	-				+1.4
2,062,622	-				+0.2
2,062,623	-				-0.0
2,062,623	-				-2.1
2,062,623	-				+0.1
2,062,623	-				+0.6
2,062,623	-				-1.0
2,062,623	-				-0.7
2,062,623	-				+2.1
2,062,623	-				+0.1
2,062,623	-				-0.1
2,062,623	-				-0.9
2,062,623	-				-1.9
2,062,623	-				-0.9
2,062,623	-				+0.2
2,062,648	+				+1.1
2,062,648	+				-0.6
2,062,648	+				+0.0
2,062,656	-				-1.0
2,062,688	-				+0.5
2,062,711	+				-0.5
2,062,711	+				-0.4
2,062,721	+		SO1956	0.10	+0.4
2,062,721	+		SO1956	0.10	+0.2
2,062,721	+		SO1956	0.10	-3.5
2,062,729	-		SO1956	0.11	+0.2
2,062,729	-		SO1956	0.11	+0.4
2,062,741	+		SO1956	0.13	-0.2
2,062,748	+		SO1956	0.15	+1.4
2,062,755	+		SO1956	0.16	-0.8
2,062,756	-		SO1956	0.16	+2.4
2,062,756	-		SO1956	0.16	-0.8
2,062,763	-		SO1956	0.17	-2.1
2,062,805	+		SO1956	0.24	+3.1
2,062,805	+		SO1956	0.24	-1.7
2,062,805	+		SO1956	0.24	+0.7
2,062,805	+		SO1956	0.24	+0.6
2,062,805	+		SO1956	0.24	-2.0
2,062,813	-		SO1956	0.25	+0.6
2,062,813	-		SO1956	0.25	+0.1
2,062,813	-		SO1956	0.25	-0.2
2,062,813	-		SO1956	0.25	+0.2
2,062,813	-		SO1956	0.25	+1.4
2,062,813	-		SO1956	0.25	+0.7
2,062,813	-		SO1956	0.25	-0.2
2,062,813	-		SO1956	0.25	+0.8
2,062,813	-		SO1956	0.25	+0.1
2,062,813	-		SO1956	0.25	+0.6
2,062,813	-		SO1956	0.25	-1.7
2,062,813	-		SO1956	0.25	-0.4
2,062,854	+		SO1956	0.32	-0.1
2,062,862	-		SO1956	0.33	+0.7
2,062,869	+		SO1956	0.34	+2.1
2,062,884	-		SO1956	0.37	+1.0
2,062,887	+		SO1956	0.37	+1.7
2,062,887	+		SO1956	0.37	-1.6
2,062,887	+		SO1956	0.37	-3.8
2,062,887	+		SO1956	0.37	+1.3
2,062,887	+		SO1956	0.37	-1.2
2,062,887	+		SO1956	0.37	+1.3
2,062,894	+		SO1956	0.39	+0.6
2,062,894	+		SO1956	0.39	+2.4
2,062,895	-		SO1956	0.39	+0.6
2,062,895	-		SO1956	0.39	-0.2
2,062,895	-		SO1956	0.39	-0.2
2,062,895	-		SO1956	0.39	-0.2
2,062,895	-		SO1956	0.39	+0.4
2,062,895	-		SO1956	0.39	-0.2
2,062,895	-		SO1956	0.39	-0.7
2,062,896	-		SO1956	0.39	+0.7
2,062,902	-		SO1956	0.40	-2.3
2,062,914	-		SO1956	0.42	-0.1
2,062,975	+		SO1956	0.52	+0.2
2,062,983	-		SO1956	0.53	-0.6
2,062,999	+		SO1956	0.56	+2.3
2,063,073	+		SO1956	0.68	+0.4
2,063,107	+		SO1956	0.74	-0.4
2,063,107	+		SO1956	0.74	+0.2
2,063,109	+		SO1956	0.74	-1.0
2,063,109	+		SO1956	0.74	+0.9
2,063,115	-		SO1956	0.75	+0.7
2,063,132	+		SO1956	0.78	+0.2
2,063,132	+		SO1956	0.78	+0.5
2,063,140	-		SO1956	0.79	+0.3
2,063,140	-		SO1956	0.79	+1.1
2,063,142	+		SO1956	0.79	-0.3
2,063,150	-		SO1956	0.81	-1.6
2,063,150	-		SO1956	0.81	-1.5
2,063,157	-		SO1956	0.82	-0.0
2,063,193	+		SO1956	0.88	-0.2
2,063,336	+				-0.3
2,063,352	+				+0.4
2,063,352	+				-1.0
2,063,377	-				-0.5
2,063,390	-				+0.7
2,063,394	+		SO1957	0.10	+0.3
2,063,403	-		SO1957	0.11	+0.5