Experiment: Fungal_growth_media_mCAFEs_v1 with nitrate 20 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt BWI76_RS24435 and BWI76_RS24440 are separated by 74 nucleotides BWI76_RS24440 and BWI76_RS24445 are separated by 378 nucleotides BWI76_RS24445 and BWI76_RS24450 are separated by 54 nucleotides
BWI76_RS24435: BWI76_RS24435 - hypothetical protein, at 5,094,906 to 5,095,958
_RS24435
BWI76_RS24440: BWI76_RS24440 - 3,4-dihydroxy-2-butanone-4-phosphate synthase, at 5,096,033 to 5,096,686
_RS24440
BWI76_RS24445: BWI76_RS24445 - hypothetical protein, at 5,097,065 to 5,097,346
_RS24445
BWI76_RS24450: BWI76_RS24450 - glycogen synthase, at 5,097,401 to 5,097,610
_RS24450
Position (kb) 5096
5097 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2 at 5095.036 kb on + strand, within BWI76_RS24435 at 5095.037 kb on + strand, within BWI76_RS24435 at 5095.044 kb on - strand, within BWI76_RS24435 at 5095.044 kb on - strand, within BWI76_RS24435 at 5095.045 kb on + strand, within BWI76_RS24435 at 5095.045 kb on - strand, within BWI76_RS24435 at 5095.045 kb on - strand, within BWI76_RS24435 at 5095.053 kb on - strand, within BWI76_RS24435 at 5095.082 kb on + strand, within BWI76_RS24435 at 5095.096 kb on - strand, within BWI76_RS24435 at 5095.102 kb on + strand, within BWI76_RS24435 at 5095.102 kb on + strand, within BWI76_RS24435 at 5095.102 kb on + strand, within BWI76_RS24435 at 5095.104 kb on + strand, within BWI76_RS24435 at 5095.110 kb on - strand, within BWI76_RS24435 at 5095.110 kb on - strand, within BWI76_RS24435 at 5095.110 kb on - strand, within BWI76_RS24435 at 5095.170 kb on + strand, within BWI76_RS24435 at 5095.170 kb on + strand, within BWI76_RS24435 at 5095.170 kb on + strand, within BWI76_RS24435 at 5095.170 kb on + strand, within BWI76_RS24435 at 5095.216 kb on + strand, within BWI76_RS24435 at 5095.229 kb on - strand, within BWI76_RS24435 at 5095.246 kb on + strand, within BWI76_RS24435 at 5095.259 kb on + strand, within BWI76_RS24435 at 5095.260 kb on + strand, within BWI76_RS24435 at 5095.267 kb on - strand, within BWI76_RS24435 at 5095.267 kb on - strand, within BWI76_RS24435 at 5095.267 kb on - strand, within BWI76_RS24435 at 5095.273 kb on - strand, within BWI76_RS24435 at 5095.284 kb on - strand, within BWI76_RS24435 at 5095.285 kb on + strand, within BWI76_RS24435 at 5095.285 kb on + strand, within BWI76_RS24435 at 5095.285 kb on + strand, within BWI76_RS24435 at 5095.293 kb on - strand, within BWI76_RS24435 at 5095.293 kb on - strand, within BWI76_RS24435 at 5095.293 kb on - strand, within BWI76_RS24435 at 5095.293 kb on - strand, within BWI76_RS24435 at 5095.293 kb on - strand, within BWI76_RS24435 at 5095.293 kb on - strand at 5095.293 kb on - strand, within BWI76_RS24435 at 5095.305 kb on - strand, within BWI76_RS24435 at 5095.328 kb on + strand, within BWI76_RS24435 at 5095.336 kb on - strand, within BWI76_RS24435 at 5095.380 kb on - strand, within BWI76_RS24435 at 5095.385 kb on + strand, within BWI76_RS24435 at 5095.414 kb on + strand, within BWI76_RS24435 at 5095.461 kb on + strand, within BWI76_RS24435 at 5095.462 kb on + strand, within BWI76_RS24435 at 5095.467 kb on + strand, within BWI76_RS24435 at 5095.469 kb on - strand at 5095.476 kb on + strand, within BWI76_RS24435 at 5095.481 kb on + strand, within BWI76_RS24435 at 5095.484 kb on - strand, within BWI76_RS24435 at 5095.536 kb on + strand, within BWI76_RS24435 at 5095.536 kb on + strand, within BWI76_RS24435 at 5095.536 kb on + strand, within BWI76_RS24435 at 5095.541 kb on + strand, within BWI76_RS24435 at 5095.544 kb on - strand, within BWI76_RS24435 at 5095.544 kb on - strand, within BWI76_RS24435 at 5095.556 kb on + strand, within BWI76_RS24435 at 5095.661 kb on + strand, within BWI76_RS24435 at 5095.661 kb on + strand, within BWI76_RS24435 at 5095.678 kb on + strand, within BWI76_RS24435 at 5095.686 kb on - strand, within BWI76_RS24435 at 5095.740 kb on + strand, within BWI76_RS24435 at 5095.740 kb on + strand, within BWI76_RS24435 at 5095.740 kb on + strand, within BWI76_RS24435 at 5095.740 kb on + strand, within BWI76_RS24435 at 5095.740 kb on + strand, within BWI76_RS24435 at 5095.787 kb on + strand, within BWI76_RS24435 at 5095.787 kb on + strand, within BWI76_RS24435 at 5095.787 kb on + strand, within BWI76_RS24435 at 5095.787 kb on + strand, within BWI76_RS24435 at 5095.795 kb on + strand, within BWI76_RS24435 at 5095.795 kb on - strand, within BWI76_RS24435 at 5095.831 kb on + strand, within BWI76_RS24435 at 5095.831 kb on + strand at 5095.833 kb on + strand, within BWI76_RS24435 at 5095.833 kb on + strand, within BWI76_RS24435 at 5095.847 kb on + strand, within BWI76_RS24435 at 5095.847 kb on + strand, within BWI76_RS24435 at 5095.847 kb on + strand, within BWI76_RS24435 at 5095.850 kb on + strand, within BWI76_RS24435 at 5095.855 kb on + strand at 5095.865 kb on + strand at 5095.865 kb on + strand at 5095.868 kb on - strand at 5095.922 kb on - strand at 5095.924 kb on + strand at 5095.924 kb on + strand at 5095.929 kb on + strand at 5095.932 kb on - strand at 5095.932 kb on - strand at 5095.932 kb on - strand at 5095.932 kb on - strand at 5095.989 kb on - strand at 5096.039 kb on + strand at 5096.039 kb on + strand at 5096.044 kb on - strand at 5096.047 kb on - strand at 5096.047 kb on - strand at 5096.056 kb on + strand at 5096.060 kb on + strand at 5096.969 kb on + strand at 5097.035 kb on + strand at 5097.035 kb on + strand at 5097.035 kb on + strand at 5097.040 kb on + strand at 5097.043 kb on - strand at 5097.050 kb on + strand at 5097.058 kb on - strand at 5097.418 kb on + strand at 5097.675 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction Fungal_growth_media_mCAFEs_v1 with nitrate 20 mM remove 5,095,036 + BWI76_RS24435 0.12 +2.0 5,095,037 + BWI76_RS24435 0.12 +0.8 5,095,044 - BWI76_RS24435 0.13 -0.6 5,095,044 - BWI76_RS24435 0.13 +0.7 5,095,045 + BWI76_RS24435 0.13 -0.8 5,095,045 - BWI76_RS24435 0.13 +0.0 5,095,045 - BWI76_RS24435 0.13 -2.0 5,095,053 - BWI76_RS24435 0.14 -1.0 5,095,082 + BWI76_RS24435 0.17 -4.0 5,095,096 - BWI76_RS24435 0.18 -0.6 5,095,102 + BWI76_RS24435 0.19 -2.1 5,095,102 + BWI76_RS24435 0.19 +1.0 5,095,102 + BWI76_RS24435 0.19 +0.0 5,095,104 + BWI76_RS24435 0.19 +0.4 5,095,110 - BWI76_RS24435 0.19 +2.3 5,095,110 - BWI76_RS24435 0.19 +0.2 5,095,110 - BWI76_RS24435 0.19 +0.0 5,095,170 + BWI76_RS24435 0.25 -0.6 5,095,170 + BWI76_RS24435 0.25 -1.6 5,095,170 + BWI76_RS24435 0.25 -1.1 5,095,170 + BWI76_RS24435 0.25 -1.5 5,095,216 + BWI76_RS24435 0.29 -0.1 5,095,229 - BWI76_RS24435 0.31 +1.8 5,095,246 + BWI76_RS24435 0.32 +0.4 5,095,259 + BWI76_RS24435 0.34 +1.0 5,095,260 + BWI76_RS24435 0.34 +0.0 5,095,267 - BWI76_RS24435 0.34 -2.7 5,095,267 - BWI76_RS24435 0.34 -1.0 5,095,267 - BWI76_RS24435 0.34 +0.0 5,095,273 - BWI76_RS24435 0.35 -1.3 5,095,284 - BWI76_RS24435 0.36 +0.4 5,095,285 + BWI76_RS24435 0.36 -0.2 5,095,285 + BWI76_RS24435 0.36 -1.6 5,095,285 + BWI76_RS24435 0.36 -0.6 5,095,293 - BWI76_RS24435 0.37 -0.7 5,095,293 - BWI76_RS24435 0.37 -0.5 5,095,293 - BWI76_RS24435 0.37 -0.9 5,095,293 - BWI76_RS24435 0.37 -0.4 5,095,293 - BWI76_RS24435 0.37 -0.6 5,095,293 - +1.0 5,095,293 - BWI76_RS24435 0.37 +0.0 5,095,305 - BWI76_RS24435 0.38 +1.0 5,095,328 + BWI76_RS24435 0.40 -0.5 5,095,336 - BWI76_RS24435 0.41 +0.3 5,095,380 - BWI76_RS24435 0.45 +1.0 5,095,385 + BWI76_RS24435 0.45 -0.6 5,095,414 + BWI76_RS24435 0.48 -0.0 5,095,461 + BWI76_RS24435 0.53 -1.8 5,095,462 + BWI76_RS24435 0.53 -0.2 5,095,467 + BWI76_RS24435 0.53 -0.2 5,095,469 - +1.0 5,095,476 + BWI76_RS24435 0.54 -0.4 5,095,481 + BWI76_RS24435 0.55 -1.6 5,095,484 - BWI76_RS24435 0.55 +0.5 5,095,536 + BWI76_RS24435 0.60 -1.0 5,095,536 + BWI76_RS24435 0.60 +0.5 5,095,536 + BWI76_RS24435 0.60 +1.0 5,095,541 + BWI76_RS24435 0.60 -0.5 5,095,544 - BWI76_RS24435 0.61 +1.0 5,095,544 - BWI76_RS24435 0.61 +2.0 5,095,556 + BWI76_RS24435 0.62 +2.0 5,095,661 + BWI76_RS24435 0.72 +0.0 5,095,661 + BWI76_RS24435 0.72 -0.2 5,095,678 + BWI76_RS24435 0.73 -0.2 5,095,686 - BWI76_RS24435 0.74 -1.0 5,095,740 + BWI76_RS24435 0.79 +1.0 5,095,740 + BWI76_RS24435 0.79 +0.6 5,095,740 + BWI76_RS24435 0.79 -0.1 5,095,740 + BWI76_RS24435 0.79 +0.0 5,095,740 + BWI76_RS24435 0.79 +0.4 5,095,787 + BWI76_RS24435 0.84 -1.4 5,095,787 + BWI76_RS24435 0.84 -1.2 5,095,787 + BWI76_RS24435 0.84 -1.8 5,095,787 + BWI76_RS24435 0.84 -2.9 5,095,795 + BWI76_RS24435 0.84 +0.2 5,095,795 - BWI76_RS24435 0.84 -2.0 5,095,831 + BWI76_RS24435 0.88 -0.5 5,095,831 + +1.0 5,095,833 + BWI76_RS24435 0.88 -0.6 5,095,833 + BWI76_RS24435 0.88 -1.0 5,095,847 + BWI76_RS24435 0.89 -1.8 5,095,847 + BWI76_RS24435 0.89 -1.5 5,095,847 + BWI76_RS24435 0.89 -0.3 5,095,850 + BWI76_RS24435 0.90 +0.3 5,095,855 + -0.1 5,095,865 + -0.6 5,095,865 + +0.2 5,095,868 - +1.3 5,095,922 - -0.6 5,095,924 + -0.1 5,095,924 + +0.2 5,095,929 + -0.0 5,095,932 - -0.3 5,095,932 - +0.0 5,095,932 - -0.8 5,095,932 - -0.6 5,095,989 - -2.0 5,096,039 + +1.0 5,096,039 + +0.0 5,096,044 - +0.3 5,096,047 - +0.8 5,096,047 - +0.4 5,096,056 + -1.3 5,096,060 + -0.3 5,096,969 + -1.0 5,097,035 + +0.1 5,097,035 + +0.8 5,097,035 + +0.2 5,097,040 + -0.1 5,097,043 - +0.6 5,097,050 + -0.7 5,097,058 - -1.0 5,097,418 + -0.4 5,097,675 + -0.1
Or see this region's nucleotide sequence