Experiment: Fungal_growth_media_mCAFEs_v1 with nitrate 20 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt BWI76_RS14620 and BWI76_RS14625 are separated by 171 nucleotides BWI76_RS14625 and BWI76_RS14630 are separated by 51 nucleotides BWI76_RS14630 and BWI76_RS14635 are separated by 40 nucleotides
BWI76_RS14620: BWI76_RS14620 - acetylornithine deacetylase or succinyl-diaminopimelate desuccinylase, at 3,068,313 to 3,069,425
_RS14620
BWI76_RS14625: BWI76_RS14625 - protein TolA, at 3,069,597 to 3,070,025
_RS14625
BWI76_RS14630: BWI76_RS14630 - TonB-dependent receptor, at 3,070,077 to 3,072,041
_RS14630
BWI76_RS14635: BWI76_RS14635 - receptor, at 3,072,082 to 3,073,140
_RS14635
Position (kb)
3070
3071
3072
3073 Strain fitness (log2 ratio)
-2
-1
0
1
2
3 at 3069.389 kb on + strand at 3069.850 kb on - strand, within BWI76_RS14625 at 3070.008 kb on - strand at 3070.193 kb on + strand at 3070.506 kb on - strand, within BWI76_RS14630 at 3070.637 kb on + strand, within BWI76_RS14630 at 3070.851 kb on - strand, within BWI76_RS14630 at 3070.858 kb on - strand, within BWI76_RS14630 at 3071.081 kb on + strand, within BWI76_RS14630 at 3071.081 kb on + strand, within BWI76_RS14630 at 3071.081 kb on + strand, within BWI76_RS14630 at 3071.081 kb on + strand, within BWI76_RS14630 at 3071.089 kb on - strand, within BWI76_RS14630 at 3071.204 kb on + strand, within BWI76_RS14630 at 3071.212 kb on - strand, within BWI76_RS14630 at 3071.262 kb on + strand, within BWI76_RS14630 at 3071.403 kb on + strand, within BWI76_RS14630 at 3071.574 kb on - strand, within BWI76_RS14630 at 3071.756 kb on + strand, within BWI76_RS14630 at 3071.785 kb on - strand, within BWI76_RS14630 at 3071.817 kb on + strand, within BWI76_RS14630 at 3071.876 kb on + strand at 3072.299 kb on + strand, within BWI76_RS14635 at 3072.307 kb on - strand, within BWI76_RS14635 at 3072.312 kb on - strand, within BWI76_RS14635 at 3072.422 kb on - strand, within BWI76_RS14635 at 3072.427 kb on - strand, within BWI76_RS14635 at 3072.432 kb on - strand, within BWI76_RS14635 at 3072.547 kb on + strand, within BWI76_RS14635 at 3072.547 kb on - strand, within BWI76_RS14635 at 3072.640 kb on - strand, within BWI76_RS14635 at 3072.643 kb on + strand, within BWI76_RS14635 at 3072.743 kb on + strand, within BWI76_RS14635 at 3072.770 kb on + strand, within BWI76_RS14635
Per-strain Table
Position Strand Gene LocusTag Fraction Fungal_growth_media_mCAFEs_v1 with nitrate 20 mM remove 3,069,389 + -0.8 3,069,850 - BWI76_RS14625 0.59 +0.1 3,070,008 - +1.0 3,070,193 + +0.7 3,070,506 - BWI76_RS14630 0.22 -1.6 3,070,637 + BWI76_RS14630 0.28 +3.1 3,070,851 - BWI76_RS14630 0.39 -0.5 3,070,858 - BWI76_RS14630 0.40 -0.7 3,071,081 + BWI76_RS14630 0.51 -2.7 3,071,081 + BWI76_RS14630 0.51 -0.6 3,071,081 + BWI76_RS14630 0.51 -0.7 3,071,081 + BWI76_RS14630 0.51 +0.3 3,071,089 - BWI76_RS14630 0.52 +0.1 3,071,204 + BWI76_RS14630 0.57 -1.8 3,071,212 - BWI76_RS14630 0.58 -0.7 3,071,262 + BWI76_RS14630 0.60 -0.3 3,071,403 + BWI76_RS14630 0.67 +2.0 3,071,574 - BWI76_RS14630 0.76 -1.0 3,071,756 + BWI76_RS14630 0.85 -0.1 3,071,785 - BWI76_RS14630 0.87 +0.3 3,071,817 + BWI76_RS14630 0.89 -0.9 3,071,876 + -0.2 3,072,299 + BWI76_RS14635 0.20 -0.8 3,072,307 - BWI76_RS14635 0.21 -0.6 3,072,312 - BWI76_RS14635 0.22 +0.3 3,072,422 - BWI76_RS14635 0.32 -0.2 3,072,427 - BWI76_RS14635 0.33 -0.3 3,072,432 - BWI76_RS14635 0.33 -0.3 3,072,547 + BWI76_RS14635 0.44 -1.2 3,072,547 - BWI76_RS14635 0.44 +0.4 3,072,640 - BWI76_RS14635 0.53 +0.8 3,072,643 + BWI76_RS14635 0.53 -0.5 3,072,743 + BWI76_RS14635 0.62 -1.9 3,072,770 + BWI76_RS14635 0.65 +1.3
Or see this region's nucleotide sequence