Strain Fitness in Klebsiella michiganensis M5al around BWI76_RS12615

Experiment: Fungal_growth_media_mCAFEs_v1 with nitrate 20 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntBWI76_RS12610 and BWI76_RS12615 are separated by 65 nucleotidesBWI76_RS12615 and BWI76_RS12620 are separated by 158 nucleotides BWI76_RS12610: BWI76_RS12610 - LysR family transcriptional regulator, at 2,631,999 to 2,632,883 _RS12610 BWI76_RS12615: BWI76_RS12615 - LysR family transcriptional regulator, at 2,632,949 to 2,633,860 _RS12615 BWI76_RS12620: BWI76_RS12620 - 2-nitropropane dioxygenase, at 2,634,019 to 2,634,999 _RS12620 Position (kb) 2632 2633 2634Strain fitness (log2 ratio) -1 0 1 2 3 4at 2632.089 kb on - strand, within BWI76_RS12610at 2632.100 kb on - strand, within BWI76_RS12610at 2632.723 kb on - strand, within BWI76_RS12610at 2632.908 kb on - strandat 2633.143 kb on - strand, within BWI76_RS12615at 2633.145 kb on + strand, within BWI76_RS12615at 2633.596 kb on + strand, within BWI76_RS12615at 2633.609 kb on - strand, within BWI76_RS12615at 2633.721 kb on + strand, within BWI76_RS12615at 2633.726 kb on + strand, within BWI76_RS12615at 2633.729 kb on - strand, within BWI76_RS12615at 2633.954 kb on + strandat 2633.962 kb on - strandat 2634.002 kb on - strandat 2634.265 kb on - strand, within BWI76_RS12620at 2634.265 kb on - strand, within BWI76_RS12620at 2634.347 kb on + strand, within BWI76_RS12620at 2634.382 kb on - strand, within BWI76_RS12620at 2634.382 kb on - strand, within BWI76_RS12620at 2634.382 kb on - strand, within BWI76_RS12620at 2634.392 kb on - strand, within BWI76_RS12620at 2634.621 kb on + strand, within BWI76_RS12620

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Per-strain Table

Position Strand Gene LocusTag Fraction Fungal_growth_media_mCAFEs_v1 with nitrate 20 mM
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2,632,089 - BWI76_RS12610 0.10 -0.2
2,632,100 - BWI76_RS12610 0.11 -0.2
2,632,723 - BWI76_RS12610 0.82 +2.1
2,632,908 - +0.3
2,633,143 - BWI76_RS12615 0.21 +0.1
2,633,145 + BWI76_RS12615 0.21 +0.4
2,633,596 + BWI76_RS12615 0.71 +1.1
2,633,609 - BWI76_RS12615 0.72 +0.4
2,633,721 + BWI76_RS12615 0.85 +3.8
2,633,726 + BWI76_RS12615 0.85 +1.3
2,633,729 - BWI76_RS12615 0.86 +0.2
2,633,954 + +0.2
2,633,962 - -1.7
2,634,002 - -0.8
2,634,265 - BWI76_RS12620 0.25 -0.2
2,634,265 - BWI76_RS12620 0.25 -1.4
2,634,347 + BWI76_RS12620 0.33 +0.8
2,634,382 - BWI76_RS12620 0.37 +0.6
2,634,382 - BWI76_RS12620 0.37 +0.8
2,634,382 - BWI76_RS12620 0.37 -0.7
2,634,392 - BWI76_RS12620 0.38 -1.3
2,634,621 + BWI76_RS12620 0.61 +1.4

Or see this region's nucleotide sequence