Experiment: Fungal_growth_media_mCAFEs_v1 with nitrate 20 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt BWI76_RS08835 and BWI76_RS08840 are separated by 44 nucleotides BWI76_RS08840 and BWI76_RS08845 are separated by 190 nucleotides BWI76_RS08845 and BWI76_RS08850 overlap by 1 nucleotides
BWI76_RS08835: BWI76_RS08835 - molybdopterin guanine dinucleotide biosynthesis protein MoaE, at 1,860,767 to 1,861,219
_RS08835
BWI76_RS08840: BWI76_RS08840 - hypothetical protein, at 1,861,264 to 1,861,968
_RS08840
BWI76_RS08845: BWI76_RS08845 - hypothetical protein, at 1,862,159 to 1,863,127
_RS08845
BWI76_RS08850: BWI76_RS08850 - cardiolipin synthase B, at 1,863,127 to 1,864,371
_RS08850
Position (kb) 1862
1863
1864 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3
4
5 at 1861.327 kb on + strand at 1861.355 kb on + strand, within BWI76_RS08840 at 1861.769 kb on - strand, within BWI76_RS08840 at 1862.127 kb on + strand at 1862.269 kb on - strand, within BWI76_RS08845 at 1862.541 kb on - strand, within BWI76_RS08845 at 1862.678 kb on - strand, within BWI76_RS08845 at 1862.710 kb on + strand, within BWI76_RS08845 at 1862.710 kb on + strand, within BWI76_RS08845 at 1862.756 kb on + strand, within BWI76_RS08845 at 1862.764 kb on - strand, within BWI76_RS08845 at 1862.839 kb on + strand, within BWI76_RS08845 at 1862.898 kb on - strand, within BWI76_RS08845 at 1862.910 kb on + strand, within BWI76_RS08845 at 1862.967 kb on + strand, within BWI76_RS08845 at 1862.967 kb on + strand, within BWI76_RS08845 at 1862.980 kb on - strand, within BWI76_RS08845 at 1863.314 kb on + strand, within BWI76_RS08850 at 1863.349 kb on + strand, within BWI76_RS08850 at 1863.499 kb on - strand, within BWI76_RS08850
Per-strain Table
Position Strand Gene LocusTag Fraction Fungal_growth_media_mCAFEs_v1 with nitrate 20 mM remove 1,861,327 + -0.1 1,861,355 + BWI76_RS08840 0.13 -0.3 1,861,769 - BWI76_RS08840 0.72 +0.0 1,862,127 + +0.0 1,862,269 - BWI76_RS08845 0.11 +4.8 1,862,541 - BWI76_RS08845 0.39 -0.8 1,862,678 - BWI76_RS08845 0.54 +0.2 1,862,710 + BWI76_RS08845 0.57 +0.2 1,862,710 + BWI76_RS08845 0.57 +0.1 1,862,756 + BWI76_RS08845 0.62 -3.5 1,862,764 - BWI76_RS08845 0.62 +0.6 1,862,839 + BWI76_RS08845 0.70 +1.2 1,862,898 - BWI76_RS08845 0.76 -0.6 1,862,910 + BWI76_RS08845 0.78 +0.4 1,862,967 + BWI76_RS08845 0.83 -1.2 1,862,967 + BWI76_RS08845 0.83 -0.4 1,862,980 - BWI76_RS08845 0.85 +0.3 1,863,314 + BWI76_RS08850 0.15 -1.6 1,863,349 + BWI76_RS08850 0.18 -0.0 1,863,499 - BWI76_RS08850 0.30 -0.3
Or see this region's nucleotide sequence